//Created by libAntimony v2.4
model waugh_model_2006__environment(time_)

  // Variable initializations:
  time_ = ;
end

model waugh_model_2006__phi_I(phi_I, alpha, k1, k2, k3, d1, phi_R, K_T, time_)

  // Assignment Rules:
  total_macrophages := phi_R + phi_I;

  // Rate Rules:
  phi_I' = (alpha * K_T + k1 * k2 * phi_I * (1.0 - k3 * (phi_I + phi_R))) - d1 * phi_I;

  // Variable initializations:
  phi_I = 200.0;
  alpha = ;
  k1 = ;
  k2 = ;
  k3 = ;
  d1 = ;
  phi_R = ;
  K_T = ;
  time_ = ;
end

model waugh_model_2006__phi_R(phi_R, alpha, k1, k2, k3, d1, phi_I, K_T, time_)

  // Rate Rules:
  phi_R' = ((1.0 - alpha) * K_T + k1 * k2 * phi_R * (1.0 - k3 * (phi_I + phi_R))) - d1 * phi_R;

  // Variable initializations:
  phi_R = 200.0;
  alpha = ;
  k1 = ;
  k2 = ;
  k3 = ;
  d1 = ;
  phi_I = ;
  K_T = ;
  time_ = ;
end

model waugh_model_2006__T(T, k4, d2, phi_I, time_)

  // Rate Rules:
  T' = k4 * phi_I - d2 * T;

  // Variable initializations:
  T = 6.0;
  k4 = ;
  d2 = ;
  phi_I = ;
  time_ = ;
end

model waugh_model_2006__K_T(K_T, T)

  // Assignment Rules:
  K_T := tau1 * power(T, 3.0) + tau2 * power(T, 2.0) + tau3 * T + tau4;

  // Variable initializations:
  tau1 = -2.47;
  tau2 = 21.94;
  tau3 = 6.41;
  tau4 = 1.75;
  T = ;
end

model waugh_model_2006__model_parameters(alpha, k1, k2, k3, k4, d1, d2, time_)

  // Assignment Rules:
  alpha := piecewise( 0.8 , ( geq(time_, 0.0)) && (time_ <= 10.0 ), 0.2 );

  // Variable initializations:
  k1 = 0.05;
  k2 = 0.693;
  k3 = 0.002;
  k4 = 0.07;
  d1 = 0.2;
  d2 = 9.1;
  time_ = ;
end

model *waugh_model_2006____main()

  // Sub-modules, and any changes to those submodules:
  environment: waugh_model_2006__environment(time_);
  phi_I: waugh_model_2006__phi_I(phi_I0, alpha, k1, k2, k3, d1, phi_R0, K_T0, time_);
  phi_R: waugh_model_2006__phi_R(phi_R0, alpha, k1, k2, k3, d1, phi_I0, K_T0, time_);
  T: waugh_model_2006__T(T0, k4, d2, phi_I0, time_);
  K_T: waugh_model_2006__K_T(K_T0, T0);
  model_parameters: waugh_model_2006__model_parameters(alpha, k1, k2, k3, k4, d1, d2, time_);
end