//Created by libAntimony v2.4
model vempati_model_2007__environment(time_)

  // Variable initializations:
  time_ = ;
end

model vempati_model_2007__v1(v1, pM9, M3, M3_pM9, kon_M3pM9, koff_M3pM9)

  // Assignment Rules:
  v1 := kon_M3pM9 * M3 * pM9 - koff_M3pM9 * M3_pM9;

  // Variable initializations:
  pM9 = ;
  M3 = ;
  M3_pM9 = ;
  kon_M3pM9 = ;
  koff_M3pM9 = ;
end

model vempati_model_2007__v2(v2, M3_pM9, kact_M3pM9)

  // Assignment Rules:
  v2 := kact_M3pM9 * M3_pM9;

  // Variable initializations:
  M3_pM9 = ;
  kact_M3pM9 = ;
end

model vempati_model_2007__v3(v3, M3_T1, M3, T1, kon_M3T1, koff_M3T1)

  // Assignment Rules:
  v3 := kon_M3T1 * M3 * T1 - koff_M3T1 * M3_T1;

  // Variable initializations:
  M3_T1 = ;
  M3 = ;
  T1 = ;
  kon_M3T1 = ;
  koff_M3T1 = ;
end

model vempati_model_2007__v4(v4, pM9_T1, pM9, T1, kon_pM9T1, koff_pM9T1)

  // Assignment Rules:
  v4 := kon_pM9T1 * pM9 * T1 - koff_pM9T1 * pM9_T1;

  // Variable initializations:
  pM9_T1 = ;
  pM9 = ;
  T1 = ;
  kon_pM9T1 = ;
  koff_pM9T1 = ;
end

model vempati_model_2007__v5(v5, pM9_T1, M3, M3_pM9_T1, kon_M3pM9T1, koff_M3pM9T1)

  // Assignment Rules:
  v5 := kon_M3pM9T1 * pM9_T1 * M3 - koff_M3pM9T1 * M3_pM9_T1;

  // Variable initializations:
  pM9_T1 = ;
  M3 = ;
  M3_pM9_T1 = ;
  kon_M3pM9T1 = ;
  koff_M3pM9T1 = ;
end

model vempati_model_2007__v6(v6, M3_pM9_T1, kact_M3pM9T1)

  // Assignment Rules:
  v6 := kact_M3pM9T1 * M3_pM9_T1;

  // Variable initializations:
  M3_pM9_T1 = ;
  kact_M3pM9T1 = ;
end

model vempati_model_2007__v7(v7, M9_T1_star, T1, M9, kon_M9T1_star, koff_M9T1_star)

  // Assignment Rules:
  v7 := kon_M9T1_star * T1 * M9 - koff_M9T1_star * M9_T1_star;

  // Variable initializations:
  M9_T1_star = ;
  T1 = ;
  M9 = ;
  kon_M9T1_star = ;
  koff_M9T1_star = ;
end

model vempati_model_2007__v8(v8, M9_T1_star, M9_T1, kon_M9T1, koff_M9T1)

  // Assignment Rules:
  v8 := kon_M9T1 * M9_T1_star - koff_M9T1 * M9_T1;

  // Variable initializations:
  M9_T1_star = ;
  M9_T1 = ;
  kon_M9T1 = ;
  koff_M9T1 = ;
end

model vempati_model_2007__v9(v9, M9_T1_M3, M9, M3_T1, kon_M9_M3T1, koff_M9_M3T1)

  // Assignment Rules:
  v9 := kon_M9_M3T1 * M9_T1_M3 - koff_M9_M3T1 * M9 * M3_T1;

  // Variable initializations:
  M9_T1_M3 = ;
  M9 = ;
  M3_T1 = ;
  kon_M9_M3T1 = ;
  koff_M9_M3T1 = ;
end

model vempati_model_2007__v10(v10, pM9_T1, M3, pM9_T1_M3, kon_M3_pM9T1, koff_M3_pM9T1)

  // Assignment Rules:
  v10 := kon_M3_pM9T1 * pM9_T1 * M3 - koff_M3_pM9T1 * pM9_T1_M3;

  // Variable initializations:
  pM9_T1 = ;
  M3 = ;
  pM9_T1_M3 = ;
  kon_M3_pM9T1 = ;
  koff_M3_pM9T1 = ;
end

model vempati_model_2007__v11(v11, pM9, M3_T1, pM9_T1_M3, kon_pM9T1M3, koff_pM9T1M3)

  // Assignment Rules:
  v11 := kon_pM9T1M3 * pM9 * M3_T1 - koff_pM9T1M3 * pM9_T1_M3;

  // Variable initializations:
  pM9 = ;
  M3_T1 = ;
  pM9_T1_M3 = ;
  kon_pM9T1M3 = ;
  koff_pM9T1M3 = ;
end

model vempati_model_2007__v12(v12, M3, pM9_T1_M3, M3_pM9_T1_M3, kon_M3pM9T1M3, koff_M3pM9T1M3)

  // Assignment Rules:
  v12 := kon_M3pM9T1M3 * M3 * pM9_T1_M3 - koff_M3pM9T1M3 * M3_pM9_T1_M3;

  // Variable initializations:
  M3 = ;
  pM9_T1_M3 = ;
  M3_pM9_T1_M3 = ;
  kon_M3pM9T1M3 = ;
  koff_M3pM9T1M3 = ;
end

model vempati_model_2007__v13(v13, M3_pM9_T1_M3, kact_M3pM9T1M3)

  // Assignment Rules:
  v13 := kact_M3pM9T1M3 * M3_pM9_T1_M3;

  // Variable initializations:
  M3_pM9_T1_M3 = ;
  kact_M3pM9T1M3 = ;
end

model vempati_model_2007__v14(v14, M9_T1_M3, kact_M9T1M3)

  // Assignment Rules:
  v14 := kact_M9T1M3 * M9_T1_M3;

  // Variable initializations:
  M9_T1_M3 = ;
  kact_M9T1M3 = ;
end

model vempati_model_2007__v15(v15, pM9, Tr, Tr_pM9, kon_TrpM9, koff_TrpM9)

  // Assignment Rules:
  v15 := kon_TrpM9 * Tr * pM9 - koff_TrpM9 * Tr_pM9;

  // Variable initializations:
  pM9 = ;
  Tr = ;
  Tr_pM9 = ;
  kon_TrpM9 = ;
  koff_TrpM9 = ;
end

model vempati_model_2007__v16(v16, Tr_pM9, kact_TrpM9)

  // Assignment Rules:
  v16 := kact_TrpM9 * Tr_pM9;

  // Variable initializations:
  Tr_pM9 = ;
  kact_TrpM9 = ;
end

model vempati_model_2007__v17(v17, pM9_T1, Tr, Tr_pM9_T1, kon_TrpM9T1, koff_TrpM9T1)

  // Assignment Rules:
  v17 := kon_TrpM9T1 * pM9_T1 * Tr - koff_TrpM9T1 * Tr_pM9_T1;

  // Variable initializations:
  pM9_T1 = ;
  Tr = ;
  Tr_pM9_T1 = ;
  kon_TrpM9T1 = ;
  koff_TrpM9T1 = ;
end

model vempati_model_2007__v18(v18, Tr_pM9_T1, kact_TrpM9T1)

  // Assignment Rules:
  v18 := kact_TrpM9T1 * Tr_pM9_T1;

  // Variable initializations:
  Tr_pM9_T1 = ;
  kact_TrpM9T1 = ;
end

model vempati_model_2007__v19(v19, Tr, pM9_T1_M3, Tr_pM9_T1_M3, kon_TrpM9T1M3, koff_TrpM9T1M3)

  // Assignment Rules:
  v19 := kon_TrpM9T1M3 * Tr * pM9_T1_M3 - koff_TrpM9T1M3 * Tr_pM9_T1_M3;

  // Variable initializations:
  Tr = ;
  pM9_T1_M3 = ;
  Tr_pM9_T1_M3 = ;
  kon_TrpM9T1M3 = ;
  koff_TrpM9T1M3 = ;
end

model vempati_model_2007__v20(v20, Tr_pM9_T1_M3, kact_TrpM9T1M3)

  // Assignment Rules:
  v20 := kact_TrpM9T1M3 * Tr_pM9_T1_M3;

  // Variable initializations:
  Tr_pM9_T1_M3 = ;
  kact_TrpM9T1M3 = ;
end

model vempati_model_2007__pM9(pM9, v1, v4, v15, v11, time_)

  // Rate Rules:
  pM9' = -(v1 + v4 + v15 + v11);

  // Variable initializations:
  pM9 = 3e-7;
  v1 = ;
  v4 = ;
  v15 = ;
  v11 = ;
  time_ = ;
end

model vempati_model_2007__M3(M3, v1, v2, v3, v5, v6, v10, v12, v13, v14, time_)

  // Rate Rules:
  M3' = (v2 + v6 + v13 + v14) - (v1 + v3 + v5 + v10 + v12);

  // Variable initializations:
  M3 = 5e-8;
  v1 = ;
  v2 = ;
  v3 = ;
  v5 = ;
  v6 = ;
  v10 = ;
  v12 = ;
  v13 = ;
  v14 = ;
  time_ = ;
end

model vempati_model_2007__M3_pM9(M3_pM9, v1, v2, time_)

  // Rate Rules:
  M3_pM9' = v1 - v2;

  // Variable initializations:
  M3_pM9 = 0;
  v1 = ;
  v2 = ;
  time_ = ;
end

model vempati_model_2007__T1(T1, v3, v4, v7, time_)

  // Rate Rules:
  T1' = -(v3 + v4 + v7);

  // Variable initializations:
  T1 = 3e-7;
  v3 = ;
  v4 = ;
  v7 = ;
  time_ = ;
end

model vempati_model_2007__M3_T1(M3_T1, v3, v9, v11, time_)

  // Rate Rules:
  M3_T1' = (v3 + v9) - v11;

  // Variable initializations:
  M3_T1 = 0;
  v3 = ;
  v9 = ;
  v11 = ;
  time_ = ;
end

model vempati_model_2007__pM9_T1(pM9_T1, v4, v5, v10, v17, time_)

  // Rate Rules:
  pM9_T1' = v4 - (v5 + v10 + v17);

  // Variable initializations:
  pM9_T1 = 0;
  v4 = ;
  v5 = ;
  v10 = ;
  v17 = ;
  time_ = ;
end

model vempati_model_2007__M3_pM9_T1(M3_pM9_T1, v5, v6, time_)

  // Rate Rules:
  M3_pM9_T1' = v5 - v6;

  // Variable initializations:
  M3_pM9_T1 = 0;
  v5 = ;
  v6 = ;
  time_ = ;
end

model vempati_model_2007__M9_T1_star(M9_T1_star, v7, v14, v8, time_)

  // Rate Rules:
  M9_T1_star' = (v7 + v14) - v8;

  // Variable initializations:
  M9_T1_star = 0;
  v7 = ;
  v14 = ;
  v8 = ;
  time_ = ;
end

model vempati_model_2007__M9(M9, v2, v7, v9, v16, time_)

  // Rate Rules:
  M9' = (v2 + v9 + v16) - v7;

  // Variable initializations:
  M9 = 0;
  v2 = ;
  v7 = ;
  v9 = ;
  v16 = ;
  time_ = ;
end

model vempati_model_2007__M9_T1(M9_T1, v8, v18, time_)

  // Rate Rules:
  M9_T1' = v8 + v18;

  // Variable initializations:
  M9_T1 = 0;
  v8 = ;
  v18 = ;
  time_ = ;
end

model vempati_model_2007__pM9_T1_M3(pM9_T1_M3, v10, v11, v12, v19, time_)

  // Rate Rules:
  pM9_T1_M3' = (v10 + v11) - (v12 + v19);

  // Variable initializations:
  pM9_T1_M3 = 0;
  v10 = ;
  v11 = ;
  v12 = ;
  v19 = ;
  time_ = ;
end

model vempati_model_2007__M3_pM9_T1_M3(M3_pM9_T1_M3, v13, v12, time_)

  // Rate Rules:
  M3_pM9_T1_M3' = v12 - v13;

  // Variable initializations:
  M3_pM9_T1_M3 = 0;
  v13 = ;
  v12 = ;
  time_ = ;
end

model vempati_model_2007__M9_T1_M3(M9_T1_M3, v9, v13, v14, v20, time_)

  // Rate Rules:
  M9_T1_M3' = (v13 + v20) - (v14 + v9);

  // Variable initializations:
  M9_T1_M3 = 0;
  v9 = ;
  v13 = ;
  v14 = ;
  v20 = ;
  time_ = ;
end

model vempati_model_2007__Tr(Tr, v15, v16, v17, v18, v19, v20, time_)

  // Rate Rules:
  Tr' = (v16 + v18 + v20) - (v15 + v17 + v19);

  // Variable initializations:
  Tr = 1e-7;
  v15 = ;
  v16 = ;
  v17 = ;
  v18 = ;
  v19 = ;
  v20 = ;
  time_ = ;
end

model vempati_model_2007__Tr_pM9(Tr_pM9, v15, v16, time_)

  // Rate Rules:
  Tr_pM9' = v15 - v16;

  // Variable initializations:
  Tr_pM9 = 0;
  v15 = ;
  v16 = ;
  time_ = ;
end

model vempati_model_2007__Tr_pM9_T1(Tr_pM9_T1, v17, v18, time_)

  // Rate Rules:
  Tr_pM9_T1' = v17 - v18;

  // Variable initializations:
  Tr_pM9_T1 = 0;
  v17 = ;
  v18 = ;
  time_ = ;
end

model vempati_model_2007__Tr_pM9_T1_M3(Tr_pM9_T1_M3, v19, v20, time_)

  // Rate Rules:
  Tr_pM9_T1_M3' = v19 - v20;

  // Variable initializations:
  Tr_pM9_T1_M3 = 0;
  v19 = ;
  v20 = ;
  time_ = ;
end

model vempati_model_2007__kinetic_parameters(kon_pM9T1, koff_pM9T1, kon_pM9T1M3, koff_pM9T1M3, kon_M3pM9, koff_M3pM9, kon_M3pM9T1, koff_M3pM9T1, kon_M3pM9T1M3, koff_M3pM9T1M3, kon_M3T1, koff_M3T1, kon_M9T1_star, koff_M9T1_star, kon_M9T1, koff_M9T1, kon_M3_pM9T1, koff_M3_pM9T1, kon_TrpM9, koff_TrpM9, kon_TrpM9T1, koff_TrpM9T1, kon_TrpM9T1M3, koff_TrpM9T1M3, kon_M9_M3T1, koff_M9_M3T1, kact_M3pM9T1, kact_M3pM9T1M3, kact_M9T1M3, kact_TrpM9, kact_TrpM9T1, kact_TrpM9T1M3, kact_M3pM9)

  // Variable initializations:
  kon_pM9T1 = 3.4e4;
  koff_pM9T1 = 7.48e-5;
  kon_pM9T1M3 = 3.4e4;
  koff_pM9T1M3 = 7.48e-5;
  kon_M3pM9 = 1e4;
  koff_M3pM9 = 0.001;
  kon_M3pM9T1 = 1e4;
  koff_M3pM9T1 = 0.001;
  kon_M3pM9T1M3 = 1e4;
  koff_M3pM9T1M3 = 0.001;
  kon_M3T1 = 1.9e6;
  koff_M3T1 = 1.26e-4;
  kon_M9T1_star = 5.6e6;
  koff_M9T1_star = 1.6e-5;
  kon_M9T1 = 6.3e-4;
  koff_M9T1 = 2.5e-4;
  kon_M3_pM9T1 = 1.9e6;
  koff_M3_pM9T1 = 1.26e-4;
  kon_TrpM9 = 1e4;
  koff_TrpM9 = 0.007;
  kon_TrpM9T1 = 1e4;
  koff_TrpM9T1 = 0.007;
  kon_TrpM9T1M3 = 1e4;
  koff_TrpM9T1M3 = 0.007;
  kon_M9_M3T1 = 7.48e-5;
  koff_M9_M3T1 = 3.4e4;
  kact_M3pM9T1 = 0.00057;
  kact_M3pM9T1M3 = 0.00057;
  kact_M9T1M3 = 1.26e-4;
  kact_TrpM9 = 0.002;
  kact_TrpM9T1 = 0.0006;
  kact_TrpM9T1M3 = 0.0006;
  kact_M3pM9 = 0.0019;
end

model *vempati_model_2007____main()

  // Sub-modules, and any changes to those submodules:
  environment: vempati_model_2007__environment(time_);
  v1: vempati_model_2007__v1(v110, pM90, M30, M3_pM90, kon_M3pM9, koff_M3pM9);
  v2: vempati_model_2007__v2(v21, M3_pM90, kact_M3pM9);
  v3: vempati_model_2007__v3(v30, M3_T10, M30, T10, kon_M3T1, koff_M3T1);
  v4: vempati_model_2007__v4(v40, pM9_T10, pM90, T10, kon_pM9T1, koff_pM9T1);
  v5: vempati_model_2007__v5(v50, pM9_T10, M30, M3_pM9_T10, kon_M3pM9T1, koff_M3pM9T1);
  v6: vempati_model_2007__v6(v60, M3_pM9_T10, kact_M3pM9T1);
  v7: vempati_model_2007__v7(v70, M9_T1_star0, T10, M90, kon_M9T1_star, koff_M9T1_star);
  v8: vempati_model_2007__v8(v80, M9_T1_star0, M9_T10, kon_M9T1, koff_M9T1);
  v9: vempati_model_2007__v9(v90, M9_T1_M30, M90, M3_T10, kon_M9_M3T1, koff_M9_M3T1);
  v10: vempati_model_2007__v10(v100, pM9_T10, M30, pM9_T1_M30, kon_M3_pM9T1, koff_M3_pM9T1);
  v11: vempati_model_2007__v11(v111, pM90, M3_T10, pM9_T1_M30, kon_pM9T1M3, koff_pM9T1M3);
  v12: vempati_model_2007__v12(v120, M30, pM9_T1_M30, M3_pM9_T1_M30, kon_M3pM9T1M3, koff_M3pM9T1M3);
  v13: vempati_model_2007__v13(v130, M3_pM9_T1_M30, kact_M3pM9T1M3);
  v14: vempati_model_2007__v14(v140, M9_T1_M30, kact_M9T1M3);
  v15: vempati_model_2007__v15(v150, pM90, Tr0, Tr_pM90, kon_TrpM9, koff_TrpM9);
  v16: vempati_model_2007__v16(v160, Tr_pM90, kact_TrpM9);
  v17: vempati_model_2007__v17(v170, pM9_T10, Tr0, Tr_pM9_T10, kon_TrpM9T1, koff_TrpM9T1);
  v18: vempati_model_2007__v18(v180, Tr_pM9_T10, kact_TrpM9T1);
  v19: vempati_model_2007__v19(v190, Tr0, pM9_T1_M30, Tr_pM9_T1_M30, kon_TrpM9T1M3, koff_TrpM9T1M3);
  v20: vempati_model_2007__v20(v200, Tr_pM9_T1_M30, kact_TrpM9T1M3);
  pM9: vempati_model_2007__pM9(pM90, v110, v40, v150, v111, time_);
  M3: vempati_model_2007__M3(M30, v110, v21, v30, v50, v60, v100, v120, v130, v140, time_);
  M3_pM9: vempati_model_2007__M3_pM9(M3_pM90, v110, v21, time_);
  T1: vempati_model_2007__T1(T10, v30, v40, v70, time_);
  M3_T1: vempati_model_2007__M3_T1(M3_T10, v30, v90, v111, time_);
  pM9_T1: vempati_model_2007__pM9_T1(pM9_T10, v40, v50, v100, v170, time_);
  M3_pM9_T1: vempati_model_2007__M3_pM9_T1(M3_pM9_T10, v50, v60, time_);
  M9_T1_star: vempati_model_2007__M9_T1_star(M9_T1_star0, v70, v140, v80, time_);
  M9: vempati_model_2007__M9(M90, v21, v70, v90, v160, time_);
  M9_T1: vempati_model_2007__M9_T1(M9_T10, v80, v180, time_);
  pM9_T1_M3: vempati_model_2007__pM9_T1_M3(pM9_T1_M30, v100, v111, v120, v190, time_);
  M3_pM9_T1_M3: vempati_model_2007__M3_pM9_T1_M3(M3_pM9_T1_M30, v130, v120, time_);
  M9_T1_M3: vempati_model_2007__M9_T1_M3(M9_T1_M30, v90, v130, v140, v200, time_);
  Tr: vempati_model_2007__Tr(Tr0, v150, v160, v170, v180, v190, v200, time_);
  Tr_pM9: vempati_model_2007__Tr_pM9(Tr_pM90, v150, v160, time_);
  Tr_pM9_T1: vempati_model_2007__Tr_pM9_T1(Tr_pM9_T10, v170, v180, time_);
  Tr_pM9_T1_M3: vempati_model_2007__Tr_pM9_T1_M3(Tr_pM9_T1_M30, v190, v200, time_);
  kinetic_parameters: vempati_model_2007__kinetic_parameters(kon_pM9T1, koff_pM9T1, kon_pM9T1M3, koff_pM9T1M3, kon_M3pM9, koff_M3pM9, kon_M3pM9T1, koff_M3pM9T1, kon_M3pM9T1M3, koff_M3pM9T1M3, kon_M3T1, koff_M3T1, kon_M9T1_star, koff_M9T1_star, kon_M9T1, koff_M9T1, kon_M3_pM9T1, koff_M3_pM9T1, kon_TrpM9, koff_TrpM9, kon_TrpM9T1, koff_TrpM9T1, kon_TrpM9T1M3, koff_TrpM9T1M3, kon_M9_M3T1, koff_M9_M3T1, kact_M3pM9T1, kact_M3pM9T1M3, kact_M9T1M3, kact_TrpM9, kact_TrpM9T1, kact_TrpM9T1M3, kact_M3pM9);
end