//Created by libAntimony v2.4 model romond_rustici_gonze_goldbeter_1999_version01__environment(time_) // Variable initializations: time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__parameters(H_1, H_2, H_3, H_4, K_1, K_2, K_3, K_4, V_M1, V_M3, U_M1, U_M3, V_2, V_4, U_2, U_4, K_c1, K_c2, K_d1, K_d2, v_d1, v_d2, v_i1, v_i2, k_d1, k_d2, K_im1, K_im2) // Variable initializations: H_1 = 0.01; H_2 = 0.01; H_3 = 0.01; H_4 = 0.01; K_1 = 0.01; K_2 = 0.01; K_3 = 0.01; K_4 = 0.01; V_M1 = 0.3; V_M3 = 0.1; U_M1 = 0.3; U_M3 = 0.1; V_2 = 0.15; V_4 = 0.05; U_2 = 0.15; U_4 = 0.05; K_c1 = 0.5; K_c2 = 0.5; K_d1 = 0.02; K_d2 = 0.02; v_d1 = 0.025; v_d2 = 0.025; v_i1 = 0.05; v_i2 = 0.05; k_d1 = 0.001; k_d2 = 0.001; K_im1 = 0.03; K_im2 = 0.03; end model romond_rustici_gonze_goldbeter_1999_version01__C_1(C_1, v_i1, v_d1, k_d1, K_im1, M_2, X_1, K_d1, time_) // Rate Rules: C_1' = ((v_i1 * K_im1) / (K_im1 + M_2) - (v_d1 * X_1 * C_1) / (K_d1 + C_1)) - k_d1 * C_1; // Variable initializations: C_1 = 2; v_i1 = ; v_d1 = ; k_d1 = ; K_im1 = ; M_2 = ; X_1 = ; K_d1 = ; time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__M_1(M_1, V_1, V_2, K_1, K_2, time_) // Rate Rules: M_1' = (V_1 * (1 - M_1)) / (K_1 + (1 - M_1)) - (V_2 * M_1) / (K_2 + M_1); // Variable initializations: M_1 = 1; V_1 = ; V_2 = ; K_1 = ; K_2 = ; time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__X_1(X_1, V_3, V_4, K_3, K_4, time_) // Rate Rules: X_1' = (V_3 * (1 - X_1)) / (K_3 + (1 - X_1)) - (V_4 * X_1) / (K_4 + X_1); // Variable initializations: X_1 = 0; V_3 = ; V_4 = ; K_3 = ; K_4 = ; time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__C_2(C_2, v_i2, v_d2, k_d2, K_im2, M_1, X_2, K_d2, time_) // Rate Rules: C_2' = ((v_i2 * K_im2) / (K_im2 + M_1) - (v_d2 * X_2 * C_2) / (K_d2 + C_2)) - k_d2 * C_2; // Variable initializations: C_2 = 0; v_i2 = ; v_d2 = ; k_d2 = ; K_im2 = ; M_1 = ; X_2 = ; K_d2 = ; time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__M_2(M_2, U_1, U_2, H_1, H_2, time_) // Rate Rules: M_2' = (U_1 * (1 - M_2)) / (H_1 + (1 - M_2)) - (U_2 * M_2) / (H_2 + M_2); // Variable initializations: M_2 = 0; U_1 = ; U_2 = ; H_1 = ; H_2 = ; time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__X_2(X_2, U_3, U_4, H_3, H_4, time_) // Rate Rules: X_2' = (U_3 * (1 - X_2)) / (H_3 + (1 - X_2)) - (U_4 * X_2) / (H_4 + X_2); // Variable initializations: X_2 = 0; U_3 = ; U_4 = ; H_3 = ; H_4 = ; time_ = ; end model romond_rustici_gonze_goldbeter_1999_version01__V_1(V_1, V_M1, C_1, K_c1) // Assignment Rules: V_1 := (C_1 / (K_c1 + C_1)) * V_M1; // Variable initializations: V_M1 = ; C_1 = ; K_c1 = ; end model romond_rustici_gonze_goldbeter_1999_version01__V_3(V_3, V_M3, M_1) // Assignment Rules: V_3 := M_1 * V_M3; // Variable initializations: V_M3 = ; M_1 = ; end model romond_rustici_gonze_goldbeter_1999_version01__U_1(U_1, U_M1, C_2, K_c2) // Assignment Rules: U_1 := (C_2 / (K_c2 + C_2)) * U_M1; // Variable initializations: U_M1 = ; C_2 = ; K_c2 = ; end model romond_rustici_gonze_goldbeter_1999_version01__U_3(U_3, U_M3, M_2) // Assignment Rules: U_3 := M_2 * U_M3; // Variable initializations: U_M3 = ; M_2 = ; end model *romond_rustici_gonze_goldbeter_1999_version01____main() // Sub-modules, and any changes to those submodules: environment: romond_rustici_gonze_goldbeter_1999_version01__environment(time_); parameters: romond_rustici_gonze_goldbeter_1999_version01__parameters(H_1, H_2, H_3, H_4, K_1, K_2, K_3, K_4, V_M1, V_M3, U_M1, U_M3, V_2, V_4, U_2, U_4, K_c1, K_c2, K_d1, K_d2, v_d1, v_d2, v_i1, v_i2, k_d1, k_d2, K_im1, K_im2); C_1: romond_rustici_gonze_goldbeter_1999_version01__C_1(C_10, v_i1, v_d1, k_d1, K_im1, M_20, X_10, K_d1, time_); M_1: romond_rustici_gonze_goldbeter_1999_version01__M_1(M_10, V_10, V_2, K_1, K_2, time_); X_1: romond_rustici_gonze_goldbeter_1999_version01__X_1(X_10, V_30, V_4, K_3, K_4, time_); C_2: romond_rustici_gonze_goldbeter_1999_version01__C_2(C_20, v_i2, v_d2, k_d2, K_im2, M_10, X_20, K_d2, time_); M_2: romond_rustici_gonze_goldbeter_1999_version01__M_2(M_20, U_10, U_2, H_1, H_2, time_); X_2: romond_rustici_gonze_goldbeter_1999_version01__X_2(X_20, U_30, U_4, H_3, H_4, time_); V_1: romond_rustici_gonze_goldbeter_1999_version01__V_1(V_10, V_M1, C_10, K_c1); V_3: romond_rustici_gonze_goldbeter_1999_version01__V_3(V_30, V_M3, M_10); U_1: romond_rustici_gonze_goldbeter_1999_version01__U_1(U_10, U_M1, C_20, K_c2); U_3: romond_rustici_gonze_goldbeter_1999_version01__U_3(U_30, U_M3, M_20); end