//Created by libAntimony v2.4 model fink_slepchenko_loew_1999_version01__environment(time_) // Variable initializations: time_ = ; end model fink_slepchenko_loew_1999_version01__Calcium_dynamics(Ca, time_, J_channel, J_pump, J_leak, beta) // Rate Rules: Ca' = beta * ((J_channel - J_pump) + J_leak); // Variable initializations: Ca = 0.05; time_ = ; J_channel = ; J_pump = ; J_leak = ; beta = ; end model fink_slepchenko_loew_1999_version01__ER(Ca_ER) // Variable initializations: Ca_ER = 400.0; end model fink_slepchenko_loew_1999_version01__Channel_kinetics(J_channel, time_, Ca, Ca_ER) // Assignment Rules: J_channel := J_max * power((I / (I + K_I)) * (Ca / (Ca + K_act)) * h, 3.0) * (1.0 - Ca / Ca_ER); // Rate Rules: h' = k_on * (K_inh - h * (Ca + K_inh)); // Variable initializations: J_max = 2880.0; h = 0.667; K_act = 0.17; K_I = 0.03; K_inh = 0.1; k_on = 8.0; I = 0.01; time_ = ; Ca = ; Ca_ER = ; end model fink_slepchenko_loew_1999_version01__SERCA_pump_kinetics(J_pump, time_, Ca) // Assignment Rules: J_pump := V_max * (power(Ca, 2.0) / (power(Ca, 2.0) + power(K_p, 2.0))); // Variable initializations: V_max = 5.85; K_p = 0.24; time_ = ; Ca = ; end model fink_slepchenko_loew_1999_version01__Calcium_buffering(beta, time_) // Assignment Rules: beta := power(1.0 + B_end / K_end + (B_ex * K_ex) / power(Ca_ex + K_ex, 2.0), -1.0); // Variable initializations: B_end = 12.0; B_ex = 11.35; K_end = 0.3; K_ex = 0.26; Ca_ex = ; time_ = ; end model fink_slepchenko_loew_1999_version01__Leak(J_leak, time_, Ca, Ca_ER) // Assignment Rules: J_leak := L * (1.0 - Ca / Ca_ER); // Variable initializations: L = 0.0804; time_ = ; Ca = ; Ca_ER = ; end model *fink_slepchenko_loew_1999_version01____main() // Sub-modules, and any changes to those submodules: environment: fink_slepchenko_loew_1999_version01__environment(time_); Calcium_dynamics: fink_slepchenko_loew_1999_version01__Calcium_dynamics(Ca, time_, J_channel, J_pump, J_leak, beta); ER: fink_slepchenko_loew_1999_version01__ER(Ca_ER); Channel_kinetics: fink_slepchenko_loew_1999_version01__Channel_kinetics(J_channel, time_, Ca, Ca_ER); SERCA_pump_kinetics: fink_slepchenko_loew_1999_version01__SERCA_pump_kinetics(J_pump, time_, Ca); Calcium_buffering: fink_slepchenko_loew_1999_version01__Calcium_buffering(beta, time_); Leak: fink_slepchenko_loew_1999_version01__Leak(J_leak, time_, Ca, Ca_ER); end