//Created by libAntimony v2.4
model chen_2006__environment(time_)

  // Variable initializations:
  time_ = ;
end

model chen_2006__Arg(Arg, Fe3, Fe3_Arg, Fe2_Arg, Fe2, k1, k_1, k4, k_4, time_)

  // Assignment Rules:
  S := (k1 * Arg * Fe3 + k4 * Arg * Fe2) - (k_1 * Fe3_Arg + k_4 * Fe2_Arg);

  // Rate Rules:
  Arg' = (k_1 * Fe3_Arg + k_4 * Fe2_Arg + S) - (k1 * Arg * Fe3 + k4 * Arg * Fe2);

  // Variable initializations:
  Arg = 100.0;
  Fe3 = ;
  Fe3_Arg = ;
  Fe2_Arg = ;
  Fe2 = ;
  k1 = ;
  k_1 = ;
  k4 = ;
  k_4 = ;
  time_ = ;
end

model chen_2006__Fe3(Fe3, Arg, Fe3_Arg, Fe3_NO, Fe2_NO, O2, Fe3_NOHA, NOHA, k1, k_1, k2, k13, k14, k8, k_8, time_)

  // Rate Rules:
  Fe3' = (k_1 * Fe3_Arg + k14 * Fe3_NO + k13 * Fe2_NO * O2 + k8 * Fe3_NOHA) - (k1 * Arg * Fe3 + k2 * Fe3 + k_8 * NOHA * Fe3);

  // Variable initializations:
  Fe3 = 0.045;
  Arg = ;
  Fe3_Arg = ;
  Fe3_NO = ;
  Fe2_NO = ;
  O2 = ;
  Fe3_NOHA = ;
  NOHA = ;
  k1 = ;
  k_1 = ;
  k2 = ;
  k13 = ;
  k14 = ;
  k8 = ;
  k_8 = ;
  time_ = ;
end

model chen_2006__Fe3_Arg(Fe3_Arg, Arg, Fe3, k1, k_1, k3, time_)

  // Rate Rules:
  Fe3_Arg' = k1 * Fe3 * Arg - (k_1 * Fe3_Arg + k3 * Fe3_Arg);

  // Variable initializations:
  Fe3_Arg = 0.0;
  Arg = ;
  Fe3 = ;
  k1 = ;
  k_1 = ;
  k3 = ;
  time_ = ;
end

model chen_2006__Fe2(Fe2, Arg, Fe3, Fe2_Arg, NOHA, Fe2_NOHA, k2, k_4, k4, k9, k_9, time_)

  // Rate Rules:
  Fe2' = (k2 * Fe3 + k_4 * Fe2_Arg + k9 * Fe2_NOHA) - (k4 * Fe2 * Arg + k_9 * Fe2 * NOHA);

  // Variable initializations:
  Fe2 = 0.0;
  Arg = ;
  Fe3 = ;
  Fe2_Arg = ;
  NOHA = ;
  Fe2_NOHA = ;
  k2 = ;
  k_4 = ;
  k4 = ;
  k9 = ;
  k_9 = ;
  time_ = ;
end

model chen_2006__Fe2_Arg(Fe2_Arg, Arg, Fe3_Arg, Fe2, Fe3_O2_Arg, O2, k4, k_4, k3, k5, k_5, time_)

  // Rate Rules:
  Fe2_Arg' = (k3 * Fe3_Arg + k_5 * Fe3_O2_Arg + k4 * Fe2 * Arg) - (k5 * Fe2_Arg * O2 + k_4 * Fe2_Arg);

  // Variable initializations:
  Fe2_Arg = 0.0;
  Arg = ;
  Fe3_Arg = ;
  Fe2 = ;
  Fe3_O2_Arg = ;
  O2 = ;
  k4 = ;
  k_4 = ;
  k3 = ;
  k5 = ;
  k_5 = ;
  time_ = ;
end

model chen_2006__Fe3_O2_Arg(Fe3_O2_Arg, Fe2_Arg, O2, k6, k5, k_5, time_)

  // Rate Rules:
  Fe3_O2_Arg' = k5 * Fe2_Arg * O2 - (k6 * Fe3_O2_Arg + k_5 * Fe3_O2_Arg);

  // Variable initializations:
  Fe3_O2_Arg = 0.0;
  Fe2_Arg = ;
  O2 = ;
  k6 = ;
  k5 = ;
  k_5 = ;
  time_ = ;
end

model chen_2006__Fe3_NOHA(Fe3_NOHA, Fe3_O2_Arg, Fe3, NOHA, k6, k7, k8, k_8, time_)

  // Rate Rules:
  Fe3_NOHA' = (k6 * Fe3_O2_Arg + k_8 * Fe3 * NOHA) - (k7 * Fe3_NOHA + k8 * Fe3_NOHA);

  // Variable initializations:
  Fe3_NOHA = 0.0;
  Fe3_O2_Arg = ;
  Fe3 = ;
  NOHA = ;
  k6 = ;
  k7 = ;
  k8 = ;
  k_8 = ;
  time_ = ;
end

model chen_2006__Fe2_NOHA(Fe2_NOHA, Fe2, Fe3_NOHA, NOHA, Fe3_O2_NOHA, O2, k9, k7, k_9, k_10, k10, time_)

  // Rate Rules:
  Fe2_NOHA' = (k7 * Fe3_NOHA + k_10 * Fe3_O2_NOHA + k_9 * Fe2 * NOHA) - (k9 * Fe2_NOHA + k10 * Fe2_NOHA * O2);

  // Variable initializations:
  Fe2_NOHA = 0.0;
  Fe2 = ;
  Fe3_NOHA = ;
  NOHA = ;
  Fe3_O2_NOHA = ;
  O2 = ;
  k9 = ;
  k7 = ;
  k_9 = ;
  k_10 = ;
  k10 = ;
  time_ = ;
end

model chen_2006__Fe3_O2_NOHA(Fe3_O2_NOHA, Fe2_NOHA, O2, k11, k10, k_10, time_)

  // Rate Rules:
  Fe3_O2_NOHA' = k10 * Fe2_NOHA * O2 - (k11 * Fe3_O2_NOHA + k_10 * Fe3_O2_NOHA);

  // Variable initializations:
  Fe3_O2_NOHA = 0.0;
  Fe2_NOHA = ;
  O2 = ;
  k11 = ;
  k10 = ;
  k_10 = ;
  time_ = ;
end

model chen_2006__Fe3_NO(Fe3_NO, Fe3_O2_NOHA, k12, k14, k11, time_)

  // Rate Rules:
  Fe3_NO' = k11 * Fe3_O2_NOHA - (k14 * Fe3_NO + k12 * Fe3_NO);

  // Variable initializations:
  Fe3_NO = 0.0;
  Fe3_O2_NOHA = ;
  k12 = ;
  k14 = ;
  k11 = ;
  time_ = ;
end

model chen_2006__Fe2_NO(Fe2_NO, Fe3_NO, O2, k13, k12, time_)

  // Rate Rules:
  Fe2_NO' = k12 * Fe3_NO - k13 * Fe2_NO * O2;

  // Variable initializations:
  Fe2_NO = 0.0;
  Fe3_NO = ;
  O2 = ;
  k13 = ;
  k12 = ;
  time_ = ;
end

model chen_2006__NO(Fe3_NO, k14, time_)

  // Assignment Rules:
  dNOdt := k14 * Fe3_NO;

  // Rate Rules:
  NO' = k14 * Fe3_NO;

  // Variable initializations:
  NO = 0.0;
  Fe3_NO = ;
  k14 = ;
  time_ = ;
end

model chen_2006__citrulline(Fe3_O2_NOHA, k11, time_)

  // Rate Rules:
  citrulline' = k11 * Fe3_O2_NOHA;

  // Variable initializations:
  citrulline = 0.0;
  Fe3_O2_NOHA = ;
  k11 = ;
  time_ = ;
end

model chen_2006__NO3(Fe2_NO, O2, k13, time_)

  // Rate Rules:
  NO3' = k13 * Fe2_NO * O2;

  // Variable initializations:
  NO3 = 0.0;
  Fe2_NO = ;
  O2 = ;
  k13 = ;
  time_ = ;
end

model chen_2006__NOHA(NOHA, Fe2_NOHA, Fe2, Fe3_NOHA, Fe3, k_8, k8, k9, k_9, time_)

  // Rate Rules:
  NOHA' = (k8 * Fe3_NOHA + k9 * Fe2_NOHA) - (k_8 * Fe3 * NOHA + k_9 * Fe2 * NOHA);

  // Variable initializations:
  NOHA = 0.0;
  Fe2_NOHA = ;
  Fe2 = ;
  Fe3_NOHA = ;
  Fe3 = ;
  k_8 = ;
  k8 = ;
  k9 = ;
  k_9 = ;
  time_ = ;
end

model chen_2006__model_constants(O2, k1, k_1, k2, k3, k4, k_4, k5, k_5, k6, k7, k8, k_8, k9, k_9, k10, k_10, k11, k12, k13, k14)

  // Variable initializations:
  O2 = 172.0;
  k1 = 0.1;
  k_1 = 0.1;
  k2 = 0.91;
  k3 = 0.91;
  k4 = 1.89;
  k_4 = 11.4;
  k5 = 2.58;
  k_5 = 98.0;
  k6 = 12.6;
  k7 = 0.91;
  k8 = 0.1;
  k_8 = 0.1;
  k9 = 11.4;
  k_9 = 1.89;
  k10 = 3.33;
  k_10 = 89.9;
  k11 = 29.4;
  k12 = 0.91;
  k13 = 0.033;
  k14 = 53.9;
end

model *chen_2006____main()

  // Sub-modules, and any changes to those submodules:
  environment: chen_2006__environment(time_);
  Arg: chen_2006__Arg(Arg0, Fe30, Fe3_Arg0, Fe2_Arg0, Fe20, k1, k_1, k4, k_4, time_);
  Fe3: chen_2006__Fe3(Fe30, Arg0, Fe3_Arg0, Fe3_NO0, Fe2_NO0, O2, Fe3_NOHA0, NOHA0, k1, k_1, k2, k13, k14, k8, k_8, time_);
  Fe3_Arg: chen_2006__Fe3_Arg(Fe3_Arg0, Arg0, Fe30, k1, k_1, k3, time_);
  Fe2: chen_2006__Fe2(Fe20, Arg0, Fe30, Fe2_Arg0, NOHA0, Fe2_NOHA0, k2, k_4, k4, k9, k_9, time_);
  Fe2_Arg: chen_2006__Fe2_Arg(Fe2_Arg0, Arg0, Fe3_Arg0, Fe20, Fe3_O2_Arg0, O2, k4, k_4, k3, k5, k_5, time_);
  Fe3_O2_Arg: chen_2006__Fe3_O2_Arg(Fe3_O2_Arg0, Fe2_Arg0, O2, k6, k5, k_5, time_);
  Fe3_NOHA: chen_2006__Fe3_NOHA(Fe3_NOHA0, Fe3_O2_Arg0, Fe30, NOHA0, k6, k7, k8, k_8, time_);
  Fe2_NOHA: chen_2006__Fe2_NOHA(Fe2_NOHA0, Fe20, Fe3_NOHA0, NOHA0, Fe3_O2_NOHA0, O2, k9, k7, k_9, k_10, k10, time_);
  Fe3_O2_NOHA: chen_2006__Fe3_O2_NOHA(Fe3_O2_NOHA0, Fe2_NOHA0, O2, k11, k10, k_10, time_);
  Fe3_NO: chen_2006__Fe3_NO(Fe3_NO0, Fe3_O2_NOHA0, k12, k14, k11, time_);
  Fe2_NO: chen_2006__Fe2_NO(Fe2_NO0, Fe3_NO0, O2, k13, k12, time_);
  NO: chen_2006__NO(Fe3_NO0, k14, time_);
  citrulline: chen_2006__citrulline(Fe3_O2_NOHA0, k11, time_);
  NO3: chen_2006__NO3(Fe2_NO0, O2, k13, time_);
  NOHA: chen_2006__NOHA(NOHA0, Fe2_NOHA0, Fe20, Fe3_NOHA0, Fe30, k_8, k8, k9, k_9, time_);
  model_constants: chen_2006__model_constants(O2, k1, k_1, k2, k3, k4, k_4, k5, k_5, k6, k7, k8, k_8, k9, k_9, k10, k_10, k11, k12, k13, k14);
end