//Created by libAntimony v2.4 model brightman_fell_2000__environment(time_) // Variable initializations: time_ = ; end model brightman_fell_2000__Rs(Rs, v1, v3, time_) // Rate Rules: Rs' = v3 - v1; // Variable initializations: Rs = 11100; v1 = ; v3 = ; time_ = ; end model brightman_fell_2000__RL(RL, v1, v2, v4, time_) // Rate Rules: RL' = (v1 - v2) - v4; // Variable initializations: RL = 0; v1 = ; v2 = ; v4 = ; time_ = ; end model brightman_fell_2000__Ri(Ri, v2, v3, v6, time_) // Rate Rules: Ri' = v2 + v3 + v6; // Variable initializations: Ri = 3900; v2 = ; v3 = ; v6 = ; time_ = ; end model brightman_fell_2000__L(L, v1, time_) // Rate Rules: L' = - v1; // Variable initializations: L = 0.0000001; v1 = ; time_ = ; end model brightman_fell_2000__R2L2(R2L2, v4, v5, v7, time_) // Rate Rules: R2L2' = (v4 - v5) - v7; // Variable initializations: R2L2 = 0; v4 = ; v5 = ; v7 = ; time_ = ; end model brightman_fell_2000__R2_CPP(R2_CPP, v7, v8, time_) // Rate Rules: R2_CPP' = v7 - v8; // Variable initializations: R2_CPP = 0; v7 = ; v8 = ; time_ = ; end model brightman_fell_2000__Li(Li, v2, v6, time_) // Rate Rules: Li' = v2 + v6; // Variable initializations: Li = 0; v2 = ; v6 = ; time_ = ; end model brightman_fell_2000__R2i(R2i, v5, v6, v8, time_) // Rate Rules: R2i' = (v5 + v8) - v6; // Variable initializations: R2i = 0; v5 = ; v6 = ; v8 = ; time_ = ; end model brightman_fell_2000__Shc(Shc, v9, v10, time_) // Rate Rules: Shc' = v10 - v9; // Variable initializations: Shc = 30000; v9 = ; v10 = ; time_ = ; end model brightman_fell_2000__ShcP(ShcP, v10, v11, v27, time_) // Rate Rules: ShcP' = (v27 - v10) - v11; // Variable initializations: ShcP = 0; v10 = ; v11 = ; v27 = ; time_ = ; end model brightman_fell_2000__ShcGS(ShcGS, v13, v11, v27, v12, time_) // Rate Rules: ShcGS' = ((v13 + v11) - v27) - v12; // Variable initializations: ShcGS = 0; v13 = ; v11 = ; v27 = ; v12 = ; time_ = ; end model brightman_fell_2000__GS(GS, v28, v11, time_) // Rate Rules: GS' = v28 - v11; // Variable initializations: GS = 20000; v28 = ; v11 = ; time_ = ; end model brightman_fell_2000__GSP(GSP, v27, v28, time_) // Rate Rules: GSP' = v27 - v28; // Variable initializations: GSP = 0; v27 = ; v28 = ; time_ = ; end model brightman_fell_2000__RasGDP(RasGDP, v15, v12, time_) // Rate Rules: RasGDP' = v15 - v12; // Variable initializations: RasGDP = 19800; v15 = ; v12 = ; time_ = ; end model brightman_fell_2000__Ras_ShcGS(Ras_ShcGS, v12, v13, time_) // Rate Rules: Ras_ShcGS' = v12 - v13; // Variable initializations: Ras_ShcGS = 0; v12 = ; v13 = ; time_ = ; end model brightman_fell_2000__RasGTP(RasGTP, RasGDP, v13, v17, v14, v16, time_) // Rate Rules: RasGTP' = ((v13 + v17) - v14) - v16; // Variable initializations: RasGTP = 200; RasGDP = ; v13 = ; v17 = ; v14 = ; v16 = ; time_ = ; end model brightman_fell_2000__GAP(GAP, v15, v14, time_) // Rate Rules: GAP' = v15 - v14; // Variable initializations: GAP = 15000; v15 = ; v14 = ; time_ = ; end model brightman_fell_2000__Ras_GAP(Ras_GAP, v14, v15, time_) // Rate Rules: Ras_GAP' = v14 - v15; // Variable initializations: Ras_GAP = 0; v14 = ; v15 = ; time_ = ; end model brightman_fell_2000__Raf(Raf, v18, v16, time_) // Rate Rules: Raf' = v18 - v16; // Variable initializations: Raf = 10000; v18 = ; v16 = ; time_ = ; end model brightman_fell_2000__Ras_Raf(Ras_Raf, v16, v17, time_) // Rate Rules: Ras_Raf' = v16 - v17; // Variable initializations: Ras_Raf = 0; v16 = ; v17 = ; time_ = ; end model brightman_fell_2000__Rafa(Rafa, v17, v18, v19, v21, time_) // Rate Rules: Rafa' = ((v17 - v19) - v21) - v18; // Variable initializations: Rafa = 0; v17 = ; v18 = ; v19 = ; v21 = ; time_ = ; end model brightman_fell_2000__MEK(MEK, v20, v19, time_) // Rate Rules: MEK' = v20 - v19; // Variable initializations: MEK = 360000; v20 = ; v19 = ; time_ = ; end model brightman_fell_2000__MEKP(MEKP, v19, v20, v21, v22, time_) // Rate Rules: MEKP' = ((v19 + v22) - v20) - v21; // Variable initializations: MEKP = 0; v19 = ; v20 = ; v21 = ; v22 = ; time_ = ; end model brightman_fell_2000__MEKPP(MEKPP, v21, v22, time_) // Rate Rules: MEKPP' = v21 - v22; // Variable initializations: MEKPP = 0; v21 = ; v22 = ; time_ = ; end model brightman_fell_2000__ERK(ERK, v24, v23, time_) // Rate Rules: ERK' = v24 - v23; // Variable initializations: ERK = 750000; v24 = ; v23 = ; time_ = ; end model brightman_fell_2000__ERKP(ERKP, v23, v26, v24, v25, time_) // Rate Rules: ERKP' = ((v23 + v26) - v24) - v25; // Variable initializations: ERKP = 0; v23 = ; v26 = ; v24 = ; v25 = ; time_ = ; end model brightman_fell_2000__ERKPP(ERKPP, v25, v26, time_) // Rate Rules: ERKPP' = v25 - v26; // Variable initializations: ERKPP = 0; v25 = ; v26 = ; time_ = ; end model brightman_fell_2000__t(t, v29, time_) // Rate Rules: t' = v29; // Variable initializations: t = 0; v29 = ; time_ = ; end model brightman_fell_2000__X(X, v30, time_) // Rate Rules: X' = v30; // Variable initializations: X = 0; v30 = ; time_ = ; end model brightman_fell_2000__v1(v1, Rs, L, RL) // Assignment Rules: v1 := k1 * Rs * L - kn1 * RL; // Variable initializations: Rs = ; L = ; RL = ; k1 = 384210000; kn1 = 0.73; end model brightman_fell_2000__v2(v2, RL, t) // Assignment Rules: v2 := f * k2 * (E + (1 - E) * (1 - exp(-power(t / DT, 3)))) * RL; // Variable initializations: RL = ; t = ; DT = 6.5; E = 0.12; k2 = 0.7; f = 0.2; end model brightman_fell_2000__v3(v3, Rs, Ri, t) // Assignment Rules: v3 := k3 * Ri - f * kn3 * (E + (1 - E) * (1 - exp(-power(t / DT, 3)))) * Rs; // Variable initializations: Rs = ; Ri = ; t = ; DT = 6.5; E = 0.12; kn3 = 0.7; f = 0.2; k3 = 0.0484; end model brightman_fell_2000__v4(v4, RL, R2L2) // Assignment Rules: v4 := k4 * RL * RL - k2_4 * R2L2; // Variable initializations: RL = ; R2L2 = ; k2_4 = 0.0000001; k4 = 0.001383; end model brightman_fell_2000__v5(v5, R2L2, t) // Assignment Rules: v5 := f * k5 * (E + (1 - E) * (1 - exp(-power(t / DT, 3)))) * R2L2; // Variable initializations: R2L2 = ; t = ; DT = 6.5; E = 0.12; k5 = 0.35; f = 0.2; end model brightman_fell_2000__v6(v6, R2i, t) // Assignment Rules: v6 := k6 * (E + (1 - E) * (1 - exp(-power(t / DT, 3)))) * R2i; // Variable initializations: R2i = ; t = ; DT = 6.5; E = 0.12; k6 = 0.35; end model brightman_fell_2000__v7(v7, R2L2, R2_CPP) // Assignment Rules: v7 := k7 * f * R2L2 - kn7 * R2_CPP; // Variable initializations: R2L2 = ; R2_CPP = ; k7 = 1; f = 0.2; kn7 = 0.000347; end model brightman_fell_2000__v8(v8, R2_CPP, t) // Assignment Rules: v8 := k8 * (E + (1 - E) * (1 - exp(-power(t / DT, 3)))) * R2_CPP; // Variable initializations: R2_CPP = ; t = ; DT = 6.5; E = 0.12; k8 = 0.35; end model brightman_fell_2000__v9(v9, R2L2, R2i, R2_CPP, Shc) // Assignment Rules: v9 := (k9 * 2 * (R2L2 + R2i + R2_CPP) * Shc) / (K_9 + Shc); // Variable initializations: R2L2 = ; R2i = ; R2_CPP = ; Shc = ; k9 = 12; K_9 = 6000; end model brightman_fell_2000__v10(v10, ShcP) // Assignment Rules: v10 := (V_10 * ShcP) / (K_10 + ShcP); // Variable initializations: ShcP = ; V_10 = 300000; K_10 = 6000; end model brightman_fell_2000__v11(v11, ShcP, GS, ShcGS) // Assignment Rules: v11 := k11 * ShcP * GS - kn11 * ShcGS; // Variable initializations: ShcP = ; GS = ; ShcGS = ; k11 = 0.002; kn11 = 3.81; end model brightman_fell_2000__v12(v12, RasGDP, ShcGS, Ras_ShcGS) // Assignment Rules: v12 := k12 * RasGDP * ShcGS - kn12 * Ras_ShcGS; // Variable initializations: RasGDP = ; ShcGS = ; Ras_ShcGS = ; k12 = 0.0163; kn12 = 10; end model brightman_fell_2000__v13(v13, Ras_ShcGS) // Assignment Rules: v13 := k_13 * Ras_ShcGS; // Variable initializations: Ras_ShcGS = ; k_13 = 15; end model brightman_fell_2000__v14(v14, RasGTP, GAP, Ras_GAP) // Assignment Rules: v14 := k14 * RasGTP * GAP - kn14 * Ras_GAP; // Variable initializations: RasGTP = ; GAP = ; Ras_GAP = ; k14 = 0.005; kn14 = 60; end model brightman_fell_2000__v15(v15, Ras_GAP) // Assignment Rules: v15 := k15 * Ras_GAP; // Variable initializations: Ras_GAP = ; k15 = 720; end model brightman_fell_2000__v16(v16, RasGTP, Raf, Ras_Raf) // Assignment Rules: v16 := k16 * RasGTP * Raf - kn16 * Ras_Raf; // Variable initializations: RasGTP = ; Raf = ; Ras_Raf = ; k16 = 0.0012; kn16 = 3; end model brightman_fell_2000__v17(v17, Ras_Raf) // Assignment Rules: v17 := k17 * Ras_Raf; // Variable initializations: Ras_Raf = ; k17 = 27; end model brightman_fell_2000__v18(v18, Rafa) // Assignment Rules: v18 := (V_18 * Rafa) / (K_18 + Rafa); // Variable initializations: Rafa = ; V_18 = 97000; K_18 = 6000; end model brightman_fell_2000__v19(v19, Rafa, MEK) // Assignment Rules: v19 := (Rafa * MEK * k19) / (K_19 + MEK); // Variable initializations: Rafa = ; MEK = ; k19 = 50; K_19 = 9000; end model brightman_fell_2000__v20(v20, MEKP) // Assignment Rules: v20 := (V_20 * MEKP) / (K_20 + MEKP); // Variable initializations: MEKP = ; V_20 = 920000; K_20 = 600000; end model brightman_fell_2000__v21(v21, Rafa, MEKP) // Assignment Rules: v21 := (Rafa * MEKP * k21) / (K_21 + MEKP); // Variable initializations: Rafa = ; MEKP = ; k21 = 50; K_21 = 9000; end model brightman_fell_2000__v22(v22, MEKPP) // Assignment Rules: v22 := (V_22 * MEKPP) / (K_22 + MEKPP); // Variable initializations: MEKPP = ; V_22 = 920000; K_22 = 600000; end model brightman_fell_2000__v23(v23, ERK, MEKP, MEKPP) // Assignment Rules: v23 := (k23 * ERK * (MEKP + MEKPP)) / (K_23 + ERK); // Variable initializations: ERK = ; MEKP = ; MEKPP = ; k23 = 8.3; K_23 = 90000; end model brightman_fell_2000__v24(v24, ERKP) // Assignment Rules: v24 := (V_24 * ERKP) / (K_24 + ERKP); // Variable initializations: ERKP = ; V_24 = 200000; K_24 = 600000; end model brightman_fell_2000__v25(v25, ERKP, MEKP, MEKPP) // Assignment Rules: v25 := (k25 * ERKP * (MEKP + MEKPP)) / (K_25 + ERKP); // Variable initializations: ERKP = ; MEKP = ; MEKPP = ; k25 = 8.3; K_25 = 90000; end model brightman_fell_2000__v26(v26, ERKPP) // Assignment Rules: v26 := (V_26 * ERKPP) / (K_26 + ERKPP); // Variable initializations: ERKPP = ; V_26 = 400000; K_26 = 600000; end model brightman_fell_2000__v27(v27, ERKPP, ShcGS) // Assignment Rules: v27 := (ERKPP * ShcGS * k27) / (K_27 + ShcGS); // Variable initializations: ERKPP = ; ShcGS = ; k27 = 1.6; K_27 = 600000; end model brightman_fell_2000__v28(v28, GSP) // Assignment Rules: v28 := (V_28 * GSP) / (K_28 + GSP); // Variable initializations: GSP = ; V_28 = 75; K_28 = 20000; end model brightman_fell_2000__v29(v29) // Assignment Rules: v29 := v_1; // Variable initializations: v_1 = 1; end model brightman_fell_2000__v30(v30, t) // Assignment Rules: v30 := k_11 * t; // Variable initializations: t = ; k_11 = 0; end model *brightman_fell_2000____main() // Sub-modules, and any changes to those submodules: environment: brightman_fell_2000__environment(time_); Rs: brightman_fell_2000__Rs(Rs0, v110, v31, time_); RL: brightman_fell_2000__RL(RL0, v110, v210, v40, time_); Ri: brightman_fell_2000__Ri(Ri0, v210, v31, v60, time_); L: brightman_fell_2000__L(L0, v110, time_); R2L2: brightman_fell_2000__R2L2(R2L20, v40, v50, v70, time_); R2_CPP: brightman_fell_2000__R2_CPP(R2_CPP0, v70, v80, time_); Li: brightman_fell_2000__Li(Li0, v210, v60, time_); R2i: brightman_fell_2000__R2i(R2i0, v50, v60, v80, time_); Shc: brightman_fell_2000__Shc(Shc0, v90, v100, time_); ShcP: brightman_fell_2000__ShcP(ShcP0, v100, v111, v270, time_); ShcGS: brightman_fell_2000__ShcGS(ShcGS0, v130, v111, v270, v120, time_); GS: brightman_fell_2000__GS(GS0, v280, v111, time_); GSP: brightman_fell_2000__GSP(GSP0, v270, v280, time_); RasGDP: brightman_fell_2000__RasGDP(RasGDP0, v150, v120, time_); Ras_ShcGS: brightman_fell_2000__Ras_ShcGS(Ras_ShcGS0, v120, v130, time_); RasGTP: brightman_fell_2000__RasGTP(RasGTP0, RasGDP0, v130, v170, v140, v160, time_); GAP: brightman_fell_2000__GAP(GAP0, v150, v140, time_); Ras_GAP: brightman_fell_2000__Ras_GAP(Ras_GAP0, v140, v150, time_); Raf: brightman_fell_2000__Raf(Raf0, v180, v160, time_); Ras_Raf: brightman_fell_2000__Ras_Raf(Ras_Raf0, v160, v170, time_); Rafa: brightman_fell_2000__Rafa(Rafa0, v170, v180, v190, v211, time_); MEK: brightman_fell_2000__MEK(MEK0, v200, v190, time_); MEKP: brightman_fell_2000__MEKP(MEKP0, v190, v200, v211, v220, time_); MEKPP: brightman_fell_2000__MEKPP(MEKPP0, v211, v220, time_); ERK: brightman_fell_2000__ERK(ERK0, v240, v230, time_); ERKP: brightman_fell_2000__ERKP(ERKP0, v230, v260, v240, v250, time_); ERKPP: brightman_fell_2000__ERKPP(ERKPP0, v250, v260, time_); t: brightman_fell_2000__t(t0, v290, time_); X: brightman_fell_2000__X(X0, v300, time_); v1: brightman_fell_2000__v1(v110, Rs0, L0, RL0); v2: brightman_fell_2000__v2(v210, RL0, t0); v3: brightman_fell_2000__v3(v31, Rs0, Ri0, t0); v4: brightman_fell_2000__v4(v40, RL0, R2L20); v5: brightman_fell_2000__v5(v50, R2L20, t0); v6: brightman_fell_2000__v6(v60, R2i0, t0); v7: brightman_fell_2000__v7(v70, R2L20, R2_CPP0); v8: brightman_fell_2000__v8(v80, R2_CPP0, t0); v9: brightman_fell_2000__v9(v90, R2L20, R2i0, R2_CPP0, Shc0); v10: brightman_fell_2000__v10(v100, ShcP0); v11: brightman_fell_2000__v11(v111, ShcP0, GS0, ShcGS0); v12: brightman_fell_2000__v12(v120, RasGDP0, ShcGS0, Ras_ShcGS0); v13: brightman_fell_2000__v13(v130, Ras_ShcGS0); v14: brightman_fell_2000__v14(v140, RasGTP0, GAP0, Ras_GAP0); v15: brightman_fell_2000__v15(v150, Ras_GAP0); v16: brightman_fell_2000__v16(v160, RasGTP0, Raf0, Ras_Raf0); v17: brightman_fell_2000__v17(v170, Ras_Raf0); v18: brightman_fell_2000__v18(v180, Rafa0); v19: brightman_fell_2000__v19(v190, Rafa0, MEK0); v20: brightman_fell_2000__v20(v200, MEKP0); v21: brightman_fell_2000__v21(v211, Rafa0, MEKP0); v22: brightman_fell_2000__v22(v220, MEKPP0); v23: brightman_fell_2000__v23(v230, ERK0, MEKP0, MEKPP0); v24: brightman_fell_2000__v24(v240, ERKP0); v25: brightman_fell_2000__v25(v250, ERKP0, MEKP0, MEKPP0); v26: brightman_fell_2000__v26(v260, ERKPP0); v27: brightman_fell_2000__v27(v270, ERKPP0, ShcGS0); v28: brightman_fell_2000__v28(v280, GSP0); v29: brightman_fell_2000__v29(v290); v30: brightman_fell_2000__v30(v300, t0); end