//Created by libAntimony v2.4 model bi_model_1999_version01__environment(t) // Variable initializations: t = ; end model bi_model_1999_version01__PLA2(t, CaPLA2, PIP2CaPLA2, PIP2PLA2, DAGCaPLA2, CaPLA2_star) // Rate Rules: PIP2_star' = - PIP2_star * CaPLA2 * kf5 + PIP2CaPLA2 * kb5; PLA2_cyt' = ((((PLA2_star * kf10 - PIP2_star * PLA2_cyt * kf1) + PIP2PLA2 * kb1) - Ca * PLA2_cyt * kf3) + CaPLA2 * kb3) - (MAPK * Vmax9 * PLA2_cyt) / (km9 + PLA2_cyt); PLA2_star' = ((- PLA2_star * kf10 + (MAPK * Vmax9 * PLA2_cyt) / (km9 + PLA2_cyt)) - Ca * PLA2_star * kf11) + CaPLA2_star * kb11; Ca' = ((- Ca * PLA2_star * kf11 + CaPLA2_star * kb11) - Ca * PLA2_cyt * kf3) + CaPLA2 * kb3; CaPLA2' = ((((Ca * PLA2_cyt * kf3 - CaPLA2 * kb3) - DAG * CaPLA2 * kf7) + DAGCaPLA2 * kb7) - PIP2_star * CaPLA2 * kf5) + PIP2CaPLA2 * kb5; DAG' = - DAG * CaPLA2 * kf7 + DAGCaPLA2 * kb7; PIP2CaPLA2' = PIP2_star * CaPLA2 * kf5 - PIP2CaPLA2 * kb5; PIP2PLA2' = PIP2_star * PLA2_cyt * kf1 - PIP2PLA2 * kb1; DAGCaPLA2' = DAG * CaPLA2 * kf7 - DAGCaPLA2 * kb7; CaPLA2_star' = Ca * PLA2_star * kf11 - CaPLA2_star * kb11; // Variable initializations: t = ; kf1 = 0.000000002; kb1 = 0.5; kf3 = 0.00000016667; kb3 = 0.1; kf5 = 0.00000002; kb5 = 0.1; kf7 = 0.000000005; kb7 = 4; kf10 = 0.17; kb10 = 0; kf11 = 0.00001; kb11 = 0.1; km9 = 25.64166667; Vmax9 = 20; PIP2_star = 2.5; PLA2_cyt = 0.4; MAPK = 0.1; PLA2_star = 0; Ca = 0.1; CaPLA2 = 0; DAG = 0.01; PIP2CaPLA2 = 0; PIP2PLA2 = 0; DAGCaPLA2 = 0; CaPLA2_star = 0; end model bi_model_1999_version01__AA(t, CaPLA2, DAGCaPLA2, CaPLA2_star, PIP2PLA2, PIP2CaPLA2) // Rate Rules: AA' = - AA * kf13 + (CaPLA2_star * Vmax12 * APC) / (km12 + APC) + (CaPLA2 * Vmax4 * APC) / (km4 + APC) + (DAGCaPLA2 * Vmax8 * APC) / (km8 + APC) + (PIP2CaPLA2 * Vmax6 * APC) / (km6 + APC) + (PIP2PLA2 * Vmax2 * APC) / (km2 + APC); APC' = AA * kf13 - ((CaPLA2_star * Vmax12 * APC) / (km12 + APC) + (CaPLA2 * Vmax4 * APC) / (km4 + APC) + (DAGCaPLA2 * Vmax8 * APC) / (km8 + APC) + (PIP2CaPLA2 * Vmax6 * APC) / (km6 + APC) + (PIP2PLA2 * Vmax2 * APC) / (km2 + APC)); // Variable initializations: t = ; kf13 = 0.4; kb13 = 0; km2 = 20; km4 = 20; km6 = 20; km8 = 20; km12 = 20; Vmax2 = 11.04; Vmax4 = 5.4; Vmax6 = 36; Vmax8 = 60; Vmax12 = 120; CaPLA2 = ; DAGCaPLA2 = ; CaPLA2_star = ; PIP2PLA2 = ; PIP2CaPLA2 = ; AA = 0; APC = 30; end model *bi_model_1999_version01____main() // Sub-modules, and any changes to those submodules: environment: bi_model_1999_version01__environment(t); PLA2: bi_model_1999_version01__PLA2(t, CaPLA2, PIP2CaPLA2, PIP2PLA2, DAGCaPLA2, CaPLA2_star); AA: bi_model_1999_version01__AA(t, CaPLA2, DAGCaPLA2, CaPLA2_star, PIP2PLA2, PIP2CaPLA2); end