// Created by libAntimony v2.8.0 model *MODEL1403110000() // Compartments and Species: compartment compartment_; species $Auxin in compartment_, $Cytokinin in compartment_, $AHP6m in compartment_; species $AHP6p in compartment_, $IAA2m in compartment_, $IAA2p in compartment_; species $ARR5m in compartment_, $ARR5p in compartment_, $PHBm in compartment_; species $miRNA in compartment_, $PHBp in compartment_, CKX3m in compartment_; species $CKX3p in compartment_, $PIN3m in compartment_, $PIN1m in compartment_; species $PIN7m in compartment_; // Assignment Rules: F_CK := 1/(1 + (CKX3p/theta_CKX3)^hill_ckx3); F_AHP6 := (b_ahp6 + (Auxin/theta_Ax)^hill_ax)/(1 + (Auxin/theta_Ax)^hill_ax + (PHBp/theta_PHB)^hill_phb); F_IAA2 := (b_iaa2 + (Auxin/theta_Ax)^hill_ax)/(1 + (Auxin/theta_Ax)^hill_ax); F_ARR5 := (b_arr5 + (Cytokinin/theta_Ck)^hill_ck)/(1 + (Cytokinin/theta_Ck)^hill_ck + (AHP6p/theta_AHP6)^hill_ahp6); F_PIN3 := b_pin3; F_PIN1 := (b_pin1 + (ARR5p/theta_ARR5)^hill_arr5)/(1 + (ARR5p/theta_ARR5)^hill_arr5); F_PIN7 := (b_pin7 + (ARR5p/theta_ARR5)^hill_arr5)/(1 + (ARR5p/theta_ARR5)^hill_arr5); // Rate Rules: Auxin' = phloem_rate_ax*p_ax - d_ax*Auxin; Cytokinin' = phloem_rate_ck*p_ck*F_CK - d_ck*Cytokinin; AHP6m' = lambda_AHP6*F_AHP6 - mu_m_AHP6*AHP6m; AHP6p' = delta_AHP6*AHP6m - mu_p_AHP6*AHP6p; IAA2m' = lambda_IAA2*F_IAA2 - mu_m_IAA2*IAA2m; IAA2p' = delta_IAA2*IAA2m - mu_p_IAA2*IAA2p; ARR5m' = lambda_ARR5*F_ARR5 - mu_m_ARR5*ARR5m; ARR5p' = delta_ARR5*ARR5m - mu_p_ARR5*ARR5p; PHBm' = p_phb - d_phb*PHBm - d_mirna_mrna*PHBm*miRNA; miRNA' = 0; PHBp' = delta_PHB*PHBm - mu_p_PHB*PHBp; CKX3p' = delta_CKX3*CKX3m - mu_p_CKX3*CKX3p; PIN3m' = lambda_PIN3*F_PIN3 - mu_m_PIN3*PIN3m; PIN1m' = lambda_PIN1*F_PIN1 - mu_m_PIN1*PIN1m; PIN7m' = lambda_PIN7*F_PIN7 - mu_m_PIN7*PIN7m; // Species initializations: Auxin = 0; Cytokinin = 0; AHP6m = 0; AHP6p = 0; IAA2m = 0; IAA2p = 0; ARR5m = 0; ARR5p = 0; PHBm = 0; miRNA = 0; PHBp = 0; CKX3m = 0; CKX3p = 0; PIN3m = 0; PIN1m = 0; PIN7m = 0; // Compartment initializations: compartment_ = 1; // Variable initializations: phloem_rate_ax = 1; p_ax = 0.06; d_ax = 1; phloem_rate_ck = 1; p_ck = 2; d_ck = 10; lambda_AHP6 = 2; mu_m_AHP6 = 1; delta_AHP6 = 1; mu_p_AHP6 = 1; lambda_IAA2 = 10; mu_m_IAA2 = 10; delta_IAA2 = 10; mu_p_IAA2 = 10; lambda_ARR5 = 20; mu_m_ARR5 = 10; delta_ARR5 = 10; mu_p_ARR5 = 10; p_phb = 2; d_phb = 1; d_mirna_mrna = 10; delta_PHB = 1; mu_p_PHB = 1; delta_CKX3 = 1; mu_p_CKX3 = 1; lambda_PIN3 = 0; mu_m_PIN3 = 0; lambda_PIN1 = 0; mu_m_PIN1 = 0; lambda_PIN7 = 1; mu_m_PIN7 = 1; b_ahp6 = 0; theta_Ax = 0.25; hill_ax = 2; theta_PHB = 0.4; hill_phb = 3; theta_CKX3 = 0.05; hill_ckx3 = 5; b_iaa2 = 0; b_arr5 = 0; theta_Ck = 0.5; hill_ck = 2; theta_AHP6 = 0.04; hill_ahp6 = 3; b_pin1 = 0; theta_ARR5 = 0.1; hill_arr5 = 3; b_pin7 = 0; b_pin3 = 1; all_section_rate_ax = 1; all_section_rate_ck = 1; mu_m_PHB = 1; delta_PIN1 = 0; delta_PIN3 = 0; delta_PIN7 = 5; mu_p_PIN1 = 0; mu_p_PIN3 = 0; mu_p_PIN7 = 1; p_mirna = 32.5; d_mirna = 1; p_ckx3 = 5; d_ckx3 = 1; // Other declarations: var F_CK, F_AHP6, F_IAA2, F_ARR5, F_PIN3, F_PIN1, F_PIN7; const compartment_, phloem_rate_ax, p_ax, d_ax, phloem_rate_ck, p_ck, d_ck; const lambda_AHP6, mu_m_AHP6, delta_AHP6, mu_p_AHP6, lambda_IAA2, mu_m_IAA2; const delta_IAA2, mu_p_IAA2, lambda_ARR5, mu_m_ARR5, delta_ARR5, mu_p_ARR5; const p_phb, d_phb, d_mirna_mrna, delta_PHB, mu_p_PHB, delta_CKX3, mu_p_CKX3; const lambda_PIN3, mu_m_PIN3, lambda_PIN1, mu_m_PIN1, lambda_PIN7, mu_m_PIN7; const b_ahp6, theta_Ax, hill_ax, theta_PHB, hill_phb, theta_CKX3, hill_ckx3; const b_iaa2, b_arr5, theta_Ck, hill_ck, theta_AHP6, hill_ahp6, b_pin1; const theta_ARR5, hill_arr5, b_pin7, b_pin3, all_section_rate_ax, all_section_rate_ck; const mu_m_PHB, delta_PIN1, delta_PIN3, delta_PIN7, mu_p_PIN1, mu_p_PIN3; const mu_p_PIN7, p_mirna, d_mirna, p_ckx3, d_ckx3; end