// Created by libAntimony v2.8.0 model *Larsen2004_CalciumSpiking_EnzymeBinding() // Compartments and Species: compartment cytoplasm, ER, mit; species $G_alpha in cytoplasm, $PLC in cytoplasm, $Ca_cyt in cytoplasm; species $Ca_ER in ER, $Ca_mit in mit, $Enz in cytoplasm, $Product in cytoplasm; // Rate Rules: G_alpha' = (k1 + k2*G_alpha) - (k3*G_alpha*PLC)/(G_alpha + K4) - (k5*G_alpha*Ca_cyt)/(G_alpha + K6); PLC' = k7*G_alpha - (k8*PLC)/(PLC + K9); Ca_cyt' = (((Ca_ER - Ca_cyt)*k10*Ca_cyt*PLC^4)/(PLC^4 + K11^4) + k12*PLC + k13*G_alpha) - (k14*Ca_cyt)/(Ca_cyt + K15) - (k16*Ca_cyt)/(Ca_cyt + K17) - (k18*Ca_cyt^8)/(K19^8 + Ca_cyt^8) + ((Ca_mit - Ca_cyt)*k20*Ca_cyt)/(Ca_cyt + K21); Ca_ER' = (-(Ca_ER - Ca_cyt)*k10*Ca_cyt*PLC^4)/(PLC^4 + K11^4) + (k16*Ca_cyt)/(Ca_cyt + K17); Ca_mit' = (k18*Ca_cyt^8)/(K19^8 + Ca_cyt^8) - ((Ca_mit - Ca_cyt)*k20*Ca_cyt)/(Ca_cyt + K21); Enz' = (k_act*Ca_cyt^p)/(KM^p + Ca_cyt^p) - k_inact*Enz; Product' = k_enz*Enz - k_rem*Product; // Species initializations: G_alpha = 0.01; PLC = 0.01/cytoplasm; Ca_cyt = 0.01/cytoplasm; Ca_ER = 10/ER; Ca_mit = 0.001; Enz = 0; Product = 0; // Compartment initializations: cytoplasm = 1; ER = 1; mit = 1; // Variable initializations: k1 = 0.01; k2 = 1.65; k3 = 0.64; K4 = 0.09; k5 = 4.88; K6 = 1.18; k7 = 2.08; k8 = 32.24; K9 = 29.09; k10 = 0.7; K11 = 3; k12 = 2.8; k13 = 13.4; k14 = 153; K15 = 0.16; k16 = 7; K17 = 0.05; k18 = 79; K19 = 3.5; k20 = 0.81; K21 = 4.5; k_act = 5; p = 4; KM = 0.62; k_inact = 0.4; k_enz = 3; k_rem = 3; // Other declarations: const cytoplasm, ER, mit, k1, k2, k3, K4, k5, K6, k7, k8, K9, k10, K11; const k12, k13, k14, K15, k16, K17, k18, K19, k20, K21, k_act, p, KM, k_inact; const k_enz, k_rem; // Display Names: mit is "mitochondria"; G_alpha is "G-alpha"; Ca_cyt is "Calcium-Cyt"; Ca_ER is "Calcium-ER"; Ca_mit is "Calcium-mit"; Enz is "Enzyme"; Product is "EnzCatlysedProduct"; end