// Created by libAntimony v2.8.0 model *Teusink1998_Glycolysis_TurboDesign() // Compartments and Species: compartment cell; species HMP in cell, Fru16P2 in cell, ATP in cell, $Glc in cell, $Tre6P in cell; species $ADP in cell; // Assignment Rules: Tre6P := HMP^2; ADP := 5 - ATP; lambda1 := HMP/KRHMP; lambda2 := ATP/KRATP; lambda3 := ATP/KiATP; R := 1 + lambda1 + lambda2 + gR*lambda1*lambda2; T := 1 + c1*lambda1 + c2*lambda2 + gT_*c1*lambda1*c2*lambda2; L := L0*((1 + ci*lambda3)/(1 + lambda3))^2; // Reactions: HK: $Glc + ATP => HMP; (cell*HK_VHK*Glc*ATP)/(HK_KGlc*HK_KATP)/((1 + Glc/HK_KGlc + (HK_wild_type*Tre6P)/HK_KiTre6P)*(1 + ATP/HK_KATP)); PFK: HMP + ATP => Fru16P2; (cell*PFK_VPFK*gR*lambda1*lambda2*R)/(R^2 + L*T^2); lower: Fru16P2 + 4$ADP => 4ATP; (cell*lower_Vlower*Fru16P2*ADP)/(lower_KFru16P2*lower_KADP)/((1 + Fru16P2/lower_KFru16P2)*(1 + ADP/lower_KADP)); ATPase: ATP => $ADP; (cell*ATPase_VATPase*ATP)/(ATPase_KATP + ATP); // Species initializations: HMP = 0.1; Fru16P2 = 1; ATP = 4; Glc = 10; // Compartment initializations: cell = 1; // Variable initializations: KRHMP = 1; KRHMP has mM; KRATP = 0.06; KRATP has mM; KiATP = 10; KiATP has mM; gR = 10; c1 = 0.0005; c2 = 1; gT_ = 1; L0 = 1000; ci = 10; HK_VHK = 68; HK_VHK has mM_per_min; HK_KATP = 0.15; HK_KATP has mM; HK_KGlc = 1; HK_KGlc has mM; HK_KiTre6P = 4.422; HK_KiTre6P has mM; HK_wild_type = 1; HK_wild_type has dimensionless; PFK_VPFK = 30; PFK_VPFK has mM_per_min; lower_Vlower = 20; lower_Vlower has mM_per_min; lower_KFru16P2 = 1; lower_KFru16P2 has mM; lower_KADP = 0.1; lower_KADP has mM; ATPase_VATPase = 68; ATPase_VATPase has mM_per_min; ATPase_KATP = 3; ATPase_KATP has mM; // Other declarations: var lambda1, lambda2, lambda3, R, T, L; const cell, KRHMP, KRATP, KiATP, gR, c1, c2, gT_, L0, ci; // Unit definitions: unit substance = 1e-3 mole; unit time_unit = 60 second; unit mM = 1e-3 mole / litre; unit mM_per_min = 1e-3 mole / (litre * 60 second); // Display Names: substance is "mmol"; time_unit is "min"; mM_per_min is "mM per min"; HMP is "hexose monophosphate"; Fru16P2 is "fructose 1,6-bisphosphate"; Glc is "glucose"; Tre6P is "trehalose 6-phosphate"; HK is "hexokinase"; PFK is "phosphofructokinase"; end