// Created by libAntimony v2.8.0 model *Rohwer2000_Phosphotransferase_System() // Compartments and Species: compartment compartment_; species EI in compartment_, PyrPI in compartment_, EIP in compartment_; species HPr in compartment_, EIPHPr in compartment_, HPrP in compartment_; species EIIA in compartment_, HPrPIIA in compartment_, EIIAP in compartment_; species EIICB in compartment_, EIIAPIICB in compartment_, EIICBP in compartment_; species EIICBPGlc in compartment_, $PEP in compartment_, $Pyr in compartment_; species $GlcP in compartment_, $Glc in compartment_; // Reactions: v1: $PEP + EI -> PyrPI; compartment_*(v1_k1f*PEP*EI - v1_k1r*PyrPI); v2: PyrPI -> EIP + $Pyr; compartment_*(v2_k2f*PyrPI - v2_k2r*Pyr*EIP); v3: HPr + EIP -> EIPHPr; compartment_*(v3_k3f*EIP*HPr - v3_k3r*EIPHPr); v4: EIPHPr -> HPrP + EI; compartment_*(v4_k4f*EIPHPr - v4_k4r*EI*HPrP); v5: HPrP + EIIA -> HPrPIIA; compartment_*(v5_k5f*HPrP*EIIA - v5_k5r*HPrPIIA); v6: HPrPIIA -> EIIAP + HPr; compartment_*(v6_k6f*HPrPIIA - v6_k6r*HPr*EIIAP); v7: EIICB + EIIAP -> EIIAPIICB; compartment_*(v7_k7f*EIIAP*EIICB - v7_k7r*EIIAPIICB); v8: EIIAPIICB -> EIICBP + EIIA; compartment_*(v8_k8f*EIIAPIICB - v8_k8r*EIIA*EIICBP); v9: EIICBP + $Glc -> EIICBPGlc; compartment_*(v9_k9f*EIICBP*Glc - v9_k9r*EIICBPGlc); v10: EIICBPGlc -> EIICB + $GlcP; compartment_*(v10_k10f*EIICBPGlc - v10_k10r*EIICB*GlcP); // Species initializations: EI = 3; PyrPI = 0; EIP = 2; HPr = 25; EIPHPr = 0; HPrP = 25; EIIA = 20; HPrPIIA = 0; EIIAP = 20; EIICB = 5; EIIAPIICB = 0; EIICBP = 5; EIICBPGlc = 0; PEP = 2800; Pyr = 900; GlcP = 50; Glc = 500; // Compartment initializations: compartment_ = 1; // Variable initializations: v1_k1f = 1960; v1_k1r = 480000; v2_k2f = 108000; v2_k2r = 294; v3_k3f = 14000; v3_k3r = 14000; v4_k4f = 84000; v4_k4r = 3360; v5_k5f = 21960; v5_k5r = 21960; v6_k6f = 4392; v6_k6r = 3384; v7_k7f = 880; v7_k7r = 880; v8_k8f = 2640; v8_k8r = 960; v9_k9f = 260; v9_k9r = 389; v10_k10f = 4800; v10_k10r = 0.0054; // Other declarations: const compartment_; // Unit definitions: unit substance = 1e-6 mole; unit time_unit = 60 second; // Display Names: substance is "micromole (default)"; time_unit is "minute (default)"; compartment_ is "cell"; end