// Created by libAntimony v2.8.0 model *Goldbeter1995() // Compartments and Species: compartment default, CYTOPLASM, compartment_0000004; species $EmptySet in default, M in CYTOPLASM, P0 in CYTOPLASM, P1 in CYTOPLASM; species P2 in CYTOPLASM, Pn in compartment_0000004, $Pt in CYTOPLASM; // Assignment Rules: Pt := P0 + P1 + P2 + Pn; // Reactions: rM: $EmptySet => M; (default*rM_Vs*rM_KI^rM_n)/(rM_KI^rM_n + Pn^rM_n); rTL: $EmptySet => P0; rTL_ks*M*default; rP01: P0 => P1; (CYTOPLASM*rP01_V1*P0)/(rP01_K1 + P0); rP10: P1 => P0; (CYTOPLASM*rP10_V2*P1)/(rP10_K2 + P1); rP12: P1 => P2; (CYTOPLASM*rP12_V3*P1)/(rP12_K3 + P1); rP21: P2 => P1; (CYTOPLASM*rP21_V4*P2)/(rP21_K4 + P2); rP2n: P2 => Pn; rP2n_k1*P2*CYTOPLASM; rPn2: Pn => P2; rPn2_k2*Pn*compartment_0000004; rmRNAd: M => $EmptySet; (rmRNAd_Vm*M*CYTOPLASM)/(rmRNAd_Km + M); rVd: P2 => $EmptySet; (CYTOPLASM*rVd_Vd*P2)/(rVd_Kd + P2); // Species initializations: EmptySet = 0; M = 0.1; P0 = 0.25; P1 = 0.25; P2 = 0.25; Pn = 0.25; // Compartment initializations: default = 1e-015; CYTOPLASM = 1e-015; compartment_0000004 = 1e-015; // Variable initializations: rM_Vs = 0.76; rM_KI = 1; rM_n = 4; rTL_ks = 0.38; rP01_V1 = 3.2; rP01_K1 = 2; rP10_V2 = 1.58; rP10_K2 = 2; rP12_V3 = 5; rP12_K3 = 2; rP21_V4 = 2.5; rP21_K4 = 2; rP2n_k1 = 1.9; rPn2_k2 = 1.3; rmRNAd_Km = 0.5; rmRNAd_Vm = 0.65; rVd_Vd = 0.95; rVd_Kd = 0.2; // Other declarations: const default, CYTOPLASM, compartment_0000004; // Unit definitions: unit substance = 1e-6 mole; unit time_unit = 3600 second; // Display Names: substance is "micromole (default)"; time_unit is "heure (default)"; compartment_0000004 is "NUCLEUS"; M is "PER mRNA"; P0 is "unphosphorylated PER"; P1 is "monophosphorylated PER"; P2 is "biphosphorylated PER"; Pn is "nuclear PER"; Pt is "total PER"; rM is "transcription of PER"; rTL is "translation of PER"; rP01 is "first phosphorylation of PER"; rP10 is "removal of the first PER phosphate"; rP12 is "second phosphorylation of PER"; rP21 is "removal of the second PER phosphate"; rP2n is "translocation of PER to the nucleus"; rPn2 is "translocation of PER to the cytoplasm"; rmRNAd is "degradation of PER mRNA"; rVd is "degradation of PER"; end