//Created by libAntimony v2.4 model vilar_rnx_2006__environment(time_) // Variable initializations: time_ = ; end model vilar_rnx_2006__v1(v1, l, RI, RII, ka) // Assignment Rules: v1 := ka * l * RI * RII; // Variable initializations: l = ; RI = ; RII = ; ka = ; end model vilar_rnx_2006__v2(v2, l_RI_RII, kcd) // Assignment Rules: v2 := kcd * l_RI_RII; // Variable initializations: l_RI_RII = ; kcd = ; end model vilar_rnx_2006__v3(v3, l_RI_RII, klid) // Assignment Rules: v3 := klid * l_RI_RII; // Variable initializations: l_RI_RII = ; klid = ; end model vilar_rnx_2006__v4(v4, l_RI_RII, ki) // Assignment Rules: v4 := ki * l_RI_RII; // Variable initializations: l_RI_RII = ; ki = ; end model vilar_rnx_2006__v5(v5, p_RI) // Assignment Rules: v5 := p_RI; // Variable initializations: p_RI = ; end model vilar_rnx_2006__v6(v6, RI, kcd) // Assignment Rules: v6 := kcd * RI; // Variable initializations: RI = ; kcd = ; end model vilar_rnx_2006__v7(v7, RI, ki) // Assignment Rules: v7 := ki * RI; // Variable initializations: RI = ; ki = ; end model vilar_rnx_2006__v8(v8, RI_endo, kr) // Assignment Rules: v8 := kr * RI_endo; // Variable initializations: RI_endo = ; kr = ; end model vilar_rnx_2006__v9(v9, l_RI_RII_endo, kr) // Assignment Rules: v9 := kr * l_RI_RII_endo; // Variable initializations: l_RI_RII_endo = ; kr = ; end model vilar_rnx_2006__v10(v10, p_RII) // Assignment Rules: v10 := p_RII; // Variable initializations: p_RII = ; end model vilar_rnx_2006__v11(v11, RII, kcd) // Assignment Rules: v11 := kcd * RII; // Variable initializations: RII = ; kcd = ; end model vilar_rnx_2006__v12(v12, RII, ki) // Assignment Rules: v12 := ki * RII; // Variable initializations: RII = ; ki = ; end model vilar_rnx_2006__v13(v13, RII_endo, kr) // Assignment Rules: v13 := kr * RII_endo; // Variable initializations: RII_endo = ; kr = ; end model vilar_rnx_2006__l(l, time_) // Assignment Rules: l := piecewise( 0.01 , geq(time_, 2500) , 0.00003 ); // Variable initializations: time_ = ; end model vilar_rnx_2006__l_RI_RII(l_RI_RII, v1, v2, v3, v4, time_) // Rate Rules: l_RI_RII' = v1 - (v2 + v3 + v4); // Variable initializations: l_RI_RII = 0.0; v1 = ; v2 = ; v3 = ; v4 = ; time_ = ; end model vilar_rnx_2006__RI(RI, v1, v5, v6, v7, v8, v9, time_) // Rate Rules: RI' = (v5 + v8 + v9) - (v1 + v6 + v7); // Variable initializations: RI = 20.0; v1 = ; v5 = ; v6 = ; v7 = ; v8 = ; v9 = ; time_ = ; end model vilar_rnx_2006__RII(RII, v1, v9, v10, v11, v12, v13, time_) // Rate Rules: RII' = (v9 + v10 + v13) - (v1 + v11 + v12); // Variable initializations: RII = 20.0; v1 = ; v9 = ; v10 = ; v11 = ; v12 = ; v13 = ; time_ = ; end model vilar_rnx_2006__l_RI_RII_endo(l_RI_RII_endo, v4, v9, time_) // Rate Rules: l_RI_RII_endo' = v4 - v9; // Variable initializations: l_RI_RII_endo = 40.0; v4 = ; v9 = ; time_ = ; end model vilar_rnx_2006__RI_endo(RI_endo, v7, v8, time_) // Rate Rules: RI_endo' = v7 - v8; // Variable initializations: RI_endo = 0.0; v7 = ; v8 = ; time_ = ; end model vilar_rnx_2006__RII_endo(RII_endo, v12, v13, time_) // Rate Rules: RII_endo' = v12 - v13; // Variable initializations: RII_endo = 0.0; v12 = ; v13 = ; time_ = ; end model vilar_rnx_2006__model_parameters(kr, kcd, klid, ka, ki, p_RI, p_RII) // Variable initializations: kr = 0.033333333; kcd = 0.0277777778; klid = 0.25; ka = 1; ki = 0.333333333; p_RI = 8; p_RII = 4; end model *vilar_rnx_2006____main() // Sub-modules, and any changes to those submodules: environment: vilar_rnx_2006__environment(time_); v1: vilar_rnx_2006__v1(v14, l0, RI0, RII0, ka); v2: vilar_rnx_2006__v2(v20, l_RI_RII0, kcd); v3: vilar_rnx_2006__v3(v30, l_RI_RII0, klid); v4: vilar_rnx_2006__v4(v40, l_RI_RII0, ki); v5: vilar_rnx_2006__v5(v50, p_RI); v6: vilar_rnx_2006__v6(v60, RI0, kcd); v7: vilar_rnx_2006__v7(v70, RI0, ki); v8: vilar_rnx_2006__v8(v80, RI_endo0, kr); v9: vilar_rnx_2006__v9(v90, l_RI_RII_endo0, kr); v10: vilar_rnx_2006__v10(v100, p_RII); v11: vilar_rnx_2006__v11(v110, RII0, kcd); v12: vilar_rnx_2006__v12(v120, RII0, ki); v13: vilar_rnx_2006__v13(v130, RII_endo0, kr); l: vilar_rnx_2006__l(l0, time_); l_RI_RII: vilar_rnx_2006__l_RI_RII(l_RI_RII0, v14, v20, v30, v40, time_); RI: vilar_rnx_2006__RI(RI0, v14, v50, v60, v70, v80, v90, time_); RII: vilar_rnx_2006__RII(RII0, v14, v90, v100, v110, v120, v130, time_); l_RI_RII_endo: vilar_rnx_2006__l_RI_RII_endo(l_RI_RII_endo0, v40, v90, time_); RI_endo: vilar_rnx_2006__RI_endo(RI_endo0, v70, v80, time_); RII_endo: vilar_rnx_2006__RII_endo(RII_endo0, v120, v130, time_); model_parameters: vilar_rnx_2006__model_parameters(kr, kcd, klid, ka, ki, p_RI, p_RII); end