//Created by libAntimony v2.4 model potter_model_2006__environment(time_) // Variable initializations: time_ = ; end model potter_model_2006__ATbl(ATbl, Qb, Qp, Ql, Qt, CTbf, CTblf, CTpf, CTbl, CTlf, CTtv, ts, time_) // Rate Rules: ATbl' = Qb * (CTbf - CTblf) + Qp * (CTpf - CTbl) + Ql * (CTlf - CTbl) + Qt * (1.0 - ts) * (CTtv - CTblf) + k2T; // Variable initializations: ATbl = 0.0; k2T = 0.17; Qb = ; Qp = ; Ql = ; Qt = ; CTbf = ; CTblf = ; CTpf = ; CTbl = ; CTlf = ; CTtv = ; ts = ; time_ = ; end model potter_model_2006__ADbl(ADbl, Qbt, Qp, Ql, CDbf, CDblf, CDpf, CDlf, CDbl, time_) // Rate Rules: ADbl' = Qbt * (CDbf - CDblf) + Qp * (CDpf - CDblf) + Ql * (CDlf - CDbl); // Variable initializations: ADbl = 0.0; Qbt = ; Qp = ; Ql = ; CDbf = ; CDblf = ; CDpf = ; CDlf = ; CDbl = ; time_ = ; end model potter_model_2006__CT_A(CT_A, CTblf, CAf, time_) // Rate Rules: CT_A' = kTA_on * CTblf * CAf - kTA_off * CT_A; // Variable initializations: CT_A = 0.0; kTA_on = 0.18; kTA_off = 8131.0; CTblf = ; CAf = ; time_ = ; end model potter_model_2006__CD_A(CD_A, CDblf, CAf, time_) // Rate Rules: CD_A' = kDA_on * CDblf * CAf - kDA_off * CD_A; // Variable initializations: CD_A = 0.0; kDA_on = 0.15; kDA_off = 5407.0; CDblf = ; CAf = ; time_ = ; end model potter_model_2006__CTblf(CTblf, CTbl, CT_A) // Assignment Rules: CTblf := CTbl - CT_A; // Variable initializations: CTbl = ; CT_A = ; end model potter_model_2006__CDblf(CDblf, CDbl, CD_A) // Assignment Rules: CDblf := CDbl - CD_A; // Variable initializations: CDbl = ; CD_A = ; end model potter_model_2006__CAf(CAf, CA, CD_A, CT_A) // Assignment Rules: CAf := CA - (CT_A + CD_A); // Variable initializations: CA = ; CD_A = ; CT_A = ; end model potter_model_2006__ATl(ATl, k1T, km5alpha, Vmax1, Ql, CTbl, CTlf, PTl, time_) // Rate Rules: ATl' = Ql * (CTbl - CTlf) - ((Vmax1 * CTlf) / (km5alpha + CTlf) + k1T * (ATl / PTl)); // Variable initializations: ATl = 0.0; k1T = ; km5alpha = ; Vmax1 = ; Ql = ; CTbl = ; CTlf = ; PTl = ; time_ = ; end model potter_model_2006__ADl(ADl, k1D, km5alpha, Vmax1, Ql, CDbl, CTlf, CDlf, PDl, time_) // Rate Rules: ADl' = Ql * (CDbl - CDlf) - ((Vmax1 * CTlf) / (km5alpha + CTlf) + k1D * (ADl / PDl)); // Variable initializations: ADl = 0.0; k1D = ; km5alpha = ; Vmax1 = ; Ql = ; CDbl = ; CTlf = ; CDlf = ; PDl = ; time_ = ; end model potter_model_2006__CTlf(CTlf, CTl, PTl) // Assignment Rules: CTlf := CTl / PTl; // Variable initializations: CTl = ; PTl = ; end model potter_model_2006__CDlf(CDlf, CDl, PDl) // Assignment Rules: CDlf := CDl / PDl; // Variable initializations: CDl = ; PDl = ; end model potter_model_2006__ATif(ATif, k1T, Qt, mu, PTif, CTblf, CTif, CTst, CLH, PTst, ts, time_) // Rate Rules: ATif' = Qt * (1.0 - ts) * (CTblf - CTif / PTif) + mu * (CTst / PTst - CTif) + k1T * CLH; // Variable initializations: ATif = 0.0; k1T = ; Qt = ; mu = ; PTif = ; CTblf = ; CTif = ; CTst = ; CLH = ; PTst = ; ts = ; time_ = ; end model potter_model_2006__ATst(ATst, mu, CTif, PTst, CTst, time_) // Rate Rules: ATst' = mu * (CTif - CTst / PTst); // Variable initializations: ATst = 0.0; mu = ; CTif = ; PTst = ; CTst = ; time_ = ; end model potter_model_2006__CTtv(CTtv, CTif, PTif) // Assignment Rules: CTtv := CTif / PTif; // Variable initializations: CTif = ; PTif = ; end model potter_model_2006__ATp(ATp, km5alpha, Vmax0, Qp, CTbl, CTpf, time_) // Rate Rules: ATp' = Qp * (CTbl - CTpf) - (Vmax0 * CTpf) / (km5alpha + CTpf); // Variable initializations: ATp = 0.0; km5alpha = ; Vmax0 = ; Qp = ; CTbl = ; CTpf = ; time_ = ; end model potter_model_2006__ADp(ADp, km5alpha, Vmax0, Qp, CDbl, CDpf, CTpf, time_) // Rate Rules: ADp' = Qp * (CDbl - CDpf) - (Vmax0 * CTpf) / (km5alpha + CTpf); // Variable initializations: ADp = 0.0; km5alpha = ; Vmax0 = ; Qp = ; CDbl = ; CDpf = ; CTpf = ; time_ = ; end model potter_model_2006__CT_R(CT_R, CTpf, CRf, time_) // Rate Rules: CT_R' = kTR_on * CTpf * CRf - kTR_off * CT_R; // Variable initializations: CT_R = 0.0; kTR_on = 0.14; kTR_off = 0.069; CTpf = ; CRf = ; time_ = ; end model potter_model_2006__CD_R(CD_R, CDpf, CRf, time_) // Rate Rules: CD_R' = kDR_on * CDpf * CRf - kDR_off * CD_R; // Variable initializations: CD_R = 0.0; kDR_on = 0.053; kDR_off = 0.018; CDpf = ; CRf = ; time_ = ; end model potter_model_2006__CDT(CDT, CD_R, CT_R, time_) // Rate Rules: CDT' = kDT_on * CD_R * CT_R - kDT_off * CDT; // Variable initializations: CDT = 0.0; kDT_on = 0.14; kDT_off = 3.13; CD_R = ; CT_R = ; time_ = ; end model potter_model_2006__CDD(CDD, CD_R, time_) // Rate Rules: CDD' = kDD_on * power(CD_R, 2.0) - kDD_off * CDD; // Variable initializations: CDD = 0.0; kDD_on = 0.14; kDD_off = 3.13; CD_R = ; time_ = ; end model potter_model_2006__CTT(CTT, CT_R, time_) // Rate Rules: CTT' = kTT_on * power(CT_R, 2.0) - kTT_off * CTT; // Variable initializations: CTT = 0.0; kTT_on = 0.14; kTT_off = 3.13; CT_R = ; time_ = ; end model potter_model_2006__CDD5a(CDD5a, CDD, CDNA5af, time_) // Rate Rules: CDD5a' = kDNA_onDD5a * CDD * CDNA5af - kDNA_offDD5a * CDD5a; // Variable initializations: CDD5a = 0.0; kDNA_onDD5a = 0.14; kDNA_offDD5a = 0.07; CDD = ; CDNA5af = ; time_ = ; end model potter_model_2006__CDDcd(CDDcd, CDD, CDNAcdf, time_) // Rate Rules: CDDcd' = kDNA_onDDcd * CDD * CDNAcdf - kDNA_offDDcd * CDDcd; // Variable initializations: CDDcd = 0.0; kDNA_onDDcd = 0.14; kDNA_offDDcd = 0.1; CDD = ; CDNAcdf = ; time_ = ; end model potter_model_2006__CDDsec(CDDsec, CDD, CDNAsecf, time_) // Rate Rules: CDDsec' = kDNA_onDDsec * CDD * CDNAsecf - kDNA_offDDsec * CDDsec; // Variable initializations: CDDsec = 0.0; kDNA_onDDsec = 0.14; kDNA_offDDsec = 0.2; CDD = ; CDNAsecf = ; time_ = ; end model potter_model_2006__CDDcp(CDDcp, CDD, CDNAcpf, time_) // Rate Rules: CDDcp' = kDNA_onDDcp * CDD * CDNAcpf - kDNA_offDDcp * CDDcp; // Variable initializations: CDDcp = 0.0; kDNA_onDDcp = 0.14; kDNA_offDDcp = 0.7; CDD = ; CDNAcpf = ; time_ = ; end model potter_model_2006__CDT5a(CDT5a, CDT, CDNA5af, time_) // Rate Rules: CDT5a' = kDNA_onDT5a * CDT * CDNA5af - kDNA_offDT5a * CDT5a; // Variable initializations: CDT5a = 0.0; kDNA_onDT5a = 0.14; kDNA_offDT5a = 0.56; CDT = ; CDNA5af = ; time_ = ; end model potter_model_2006__CDTcd(CDTcd, CDT, CDNAcdf, time_) // Rate Rules: CDTcd' = kDNA_onDTcd * CDT * CDNAcdf - kDNA_offDTcd * CDTcd; // Variable initializations: CDTcd = 0.0; kDNA_onDTcd = 0.14; kDNA_offDTcd = 0.8; CDT = ; CDNAcdf = ; time_ = ; end model potter_model_2006__CDTsec(CDTsec, CDT, CDNAsecf, time_) // Rate Rules: CDTsec' = kDNA_onDTsec * CDT * CDNAsecf - kDNA_offDTsec * CDTsec; // Variable initializations: CDTsec = 0.0; kDNA_onDTsec = 0.14; kDNA_offDTsec = 1.6; CDT = ; CDNAsecf = ; time_ = ; end model potter_model_2006__CDTcp(CDTcp, CDT, CDNAcpf, time_) // Rate Rules: CDTcp' = kDNA_onDTcp * CDT * CDNAcpf - kDNA_offDTcp * CDTcp; // Variable initializations: CDTcp = 0.0; kDNA_onDTcp = 0.14; kDNA_offDTcp = 5.6; CDT = ; CDNAcpf = ; time_ = ; end model potter_model_2006__CTT5a(CTT5a, CTT, CDNA5af, time_) // Rate Rules: CTT5a' = kDNA_onTT5a * CTT * CDNA5af - kDNA_offTT5a * CTT5a; // Variable initializations: CTT5a = 0.0; kDNA_onTT5a = 0.14; kDNA_offTT5a = 0.84; CTT = ; CDNA5af = ; time_ = ; end model potter_model_2006__CTTcd(CTTcd, CTT, CDNAcdf, time_) // Rate Rules: CTTcd' = kDNA_onTTcd * CTT * CDNAcdf - kDNA_offTTcd * CTTcd; // Variable initializations: CTTcd = 0.0; kDNA_onTTcd = 0.14; kDNA_offTTcd = 1.2; CTT = ; CDNAcdf = ; time_ = ; end model potter_model_2006__CTTsec(CTTsec, CTT, CDNAsecf, time_) // Rate Rules: CTTsec' = kDNA_onTTsec * CTT * CDNAsecf - kDNA_offTTsec * CTTsec; // Variable initializations: CTTsec = 0.0; kDNA_onTTsec = 0.14; kDNA_offTTsec = 2.4; CTT = ; CDNAsecf = ; time_ = ; end model potter_model_2006__CTTcp(CTTcp, CTT, CDNAcpf, time_) // Rate Rules: CTTcp' = kDNA_onTTcp * CTT * CDNAcpf - kDNA_offTTcp * CTTcp; // Variable initializations: CTTcp = 0.0; kDNA_onTTcp = 0.14; kDNA_offTTcp = 8.4; CTT = ; CDNAcpf = ; time_ = ; end model potter_model_2006__CTpf(CTpf, CTp, CT_R, CTT, CDT, CTTsec, CDTsec, CTTcd, CDTcd, CTTcp, CDTcp, CTT5a, CDT5a) // Assignment Rules: CTpf := (CTp - (CT_R + 2.0 * CTT + CDT + T)) / (1.0 + NTp); T := CTTsec + CDTsec + CTT5a + CDT5a + CTTcd + CDTcd + CTTcp + CDTcp; // Variable initializations: NTp = 0.79; CTp = ; CT_R = ; CTT = ; CDT = ; CTTsec = ; CDTsec = ; CTTcd = ; CDTcd = ; CTTcp = ; CDTcp = ; CTT5a = ; CDT5a = ; end model potter_model_2006__CDpf(CDpf, CDp, CD_R, CDD, CDT, CDDsec, CDTsec, CDDcd, CDTcd, CDDcp, CDTcp, CDD5a, CDT5a) // Assignment Rules: CDpf := (CDp - (CD_R + 2.0 * CDD + CDT + D)) / (1.0 + NDp); D := CDDsec + CDTsec + CDD5a + CDT5a + CDDcd + CDTcd + CDDcp + CDTcp; // Variable initializations: NDp = 1.00; CDp = ; CD_R = ; CDD = ; CDT = ; CDDsec = ; CDTsec = ; CDDcd = ; CDTcd = ; CDDcp = ; CDTcp = ; CDD5a = ; CDT5a = ; end model potter_model_2006__CRf(CRf, CR, CT_R, CD_R, CTT, CDD, CDT, CDNAcdf, CDNAcpf, CDNAsecf, CDNA5af) // Assignment Rules: CRf := CR - (CT_R + CD_R + 2.0 * (CTT + CDD + CDT) + 2.0 * (CDNAcdf + CDNAsecf + CDNAcpf + CDNA5af)); // Variable initializations: CR = ; CT_R = ; CD_R = ; CTT = ; CDD = ; CDT = ; CDNAcdf = ; CDNAcpf = ; CDNAsecf = ; CDNA5af = ; end model potter_model_2006__CDNAcdf(CDNAcdf, CTTcd, CDNAcd, CDTcd, CDDcd) // Assignment Rules: CDNAcdf := CDNAcd - (CTTcd + CDDcd + CDTcd); // Variable initializations: CTTcd = ; CDNAcd = ; CDTcd = ; CDDcd = ; end model potter_model_2006__CDNAsecf(CDNAsecf, CTTsec, CDNAsec, CDTsec, CDDsec) // Assignment Rules: CDNAsecf := CDNAsec - (CTTsec + CDDsec + CDTsec); // Variable initializations: CTTsec = ; CDNAsec = ; CDTsec = ; CDDsec = ; end model potter_model_2006__CDNA5af(CDNA5af, CTT5a, CDNA5a, CDT5a, CDD5a) // Assignment Rules: CDNA5af := CDNA5a - (CTT5a + CDD5a + CDT5a); // Variable initializations: CTT5a = ; CDNA5a = ; CDT5a = ; CDD5a = ; end model potter_model_2006__CDNAcpf(CDNAcpf, CTTcp, CDNAcp, CDTcp, CDDcp) // Assignment Rules: CDNAcpf := CDNAcp - (CTTcp + CDDcp + CDTcp); // Variable initializations: CTTcp = ; CDNAcp = ; CDTcp = ; CDDcp = ; end model potter_model_2006__DNAocp(DNAocp, CTTcp, CDNAcp, CDTcp, CDDcp) // Assignment Rules: DNAocp := (CTTcp + CDDcp + CDTcp) / CDNAcp; // Variable initializations: CTTcp = ; CDNAcp = ; CDTcp = ; CDDcp = ; end model potter_model_2006__DNAosec(DNAosec, CTTsec, CDNAsec, CDTsec, CDDsec) // Assignment Rules: DNAosec := (CTTsec + CDDsec + CDTsec) / CDNAsec; // Variable initializations: CTTsec = ; CDNAsec = ; CDTsec = ; CDDsec = ; end model potter_model_2006__DNAocd(DNAocd, CTTcd, CDNAcd, CDTcd, CDDcd) // Assignment Rules: DNAocd := (CTTcd + CDDcd + CDTcd) / CDNAcd; // Variable initializations: CTTcd = ; CDNAcd = ; CDTcd = ; CDDcd = ; end model potter_model_2006__DNAo5a(DNAo5a, CTT5a, CDNA5a, CDT5a, CDD5a) // Assignment Rules: DNAo5a := (CTT5a + CDD5a + CDT5a) / CDNA5a; // Variable initializations: CTT5a = ; CDNA5a = ; CDT5a = ; CDD5a = ; end model potter_model_2006__ATb(ATb, Qb, CTb, CTblf, PTb, time_) // Rate Rules: ATb' = Qb * (CTblf - CTb / PTb); // Variable initializations: ATb = 0.0; Qb = ; CTb = ; CTblf = ; PTb = ; time_ = ; end model potter_model_2006__ADb(ADb, Qbt, CDb, CDblf, PDb, time_) // Rate Rules: ADb' = Qbt * (CDblf - CDb / PDb); // Variable initializations: ADb = 0.0; Qbt = ; CDb = ; CDblf = ; PDb = ; time_ = ; end model potter_model_2006__ALH(ALH, CTblf, CDblf, time_) // Assignment Rules: A := - kLH1 * (alpha_T * CTblf + alpha_D * CDblf) + kLH2; B := kLH3; // Rate Rules: ALH' = piecewise( A - kLH4 * ALH , A > B , B - kLH4 * ALH ); // Variable initializations: ALH = 0.0; kLH1 = 0.13; kLH2 = 0.026; kLH3 = 1.68E-4; kLH4 = 0.80; alpha_T = 0.25; alpha_D = 0.75; CTblf = ; CDblf = ; time_ = ; end model potter_model_2006__AR(AR, CRf, time_) // Rate Rules: AR' = k1R - keR * CRf; // Variable initializations: AR = 0.0; k1R = 68.15; keR = 71.90; CRf = ; time_ = ; end model potter_model_2006__CR(CR, AR, Vp) // Assignment Rules: CR := AR / Vp; // Variable initializations: AR = ; Vp = ; end model potter_model_2006__Qp(Qp, VPC1, VPC2) // Assignment Rules: Qp := kQp * Vpc; Vpc := VPC1 + VPC2; // Variable initializations: kQp = 73.84; VPC1 = ; VPC2 = ; end model potter_model_2006__Vmax(Vmax, DNAo5a) // Assignment Rules: Vmax := k5a * DNAo5a; // Variable initializations: k5a = 3.02; DNAo5a = ; end model potter_model_2006__VPC1(VPC1, VPC1b, DNAocp, DNAocd, time_) // Rate Rules: VPC1' = (VPC1 / VPC1b) * kcpl * DNAocp - kcd1 * (1.0 - DNAocd) * VPC1; // Variable initializations: VPC1 = 0.0; kcpl = 1.17E-7; kcd1 = 0.014; VPC1b = ; DNAocp = ; DNAocd = ; time_ = ; end model potter_model_2006__VPL1(VPL1, VPC1b, VPC1, DNAosec, time_) // Rate Rules: VPL1' = (VPC1 / VPC1b) * ksec * DNAosec - kflo * VPL1; // Variable initializations: VPL1 = 0.0; ksec = 8.44E-6; kflo = 0.043; VPC1b = ; VPC1 = ; DNAosec = ; time_ = ; end model potter_model_2006__Vp(Vp, VPC1, VPC2, VPL1, VPL2) // Assignment Rules: Vp := VPC1 + VPC2 + VPL1 + VPL2; // Variable initializations: VPC1 = ; VPC2 = ; VPL1 = ; VPL2 = ; end model potter_model_2006__model_parameters(Qb, Ql, Qt, Qbt, k1T, k1D, km5alpha, ts, mu, Vmax1, Vmax0, PTif, PTst, PTl, PDl, PTb, PDb, CTbf, CTbl, CDbf, CDbl, CA, CTl, CDl, CTst, CLH, CTif, CDNAcd, CDNAsec, CDNAcp, CDNA5a, CTb, CDb, VPC1b, VPC2, VPL2, CTp, CDp, Qp) // Assignment Rules: Qb := Qc - (Qp + Qt + Ql); Qbt := Qc - (Qp + Ql); CTbf := CTb / PTb; CDbf := CDb / PDb; // Variable initializations: Ql = 1.06; Qt = 0.061; Qc = 6.08; k1T = 87.93; k1D = 77.20; km5alpha = 40.00; ts = 0.56; mu = 1000.0; Vmax1 = 3.65; Vmax0 = 2.89; PTif = 1.96; PTst = 1.00; PTl = 2.75; PDl = 2.00; PTb = 1.00; PDb = 0.62; CTbl = 7.60; CDbl = 0.59; CA = 5.00E5; CTl = 9.92; CDl = 0.92; CTst = 307.29; CLH = 0.104; CTif = 307.29; CDNAcd = 0.075; CDNAsec = 0.075; CDNAcp = 0.075; CDNA5a = 0.075; CTb = 0.6275; CDb = 0.019884; VPC1b = 1E-4; VPC2 = 5.08E-5; VPL2 = 3.08E-6; CTp = 11.38; CDp = 52.46; Qp = ; end model *potter_model_2006____main() // Sub-modules, and any changes to those submodules: environment: potter_model_2006__environment(time_); ATbl: potter_model_2006__ATbl(ATbl0, Qb, Qp0, Ql, Qt, CTbf, CTblf0, CTpf0, CTbl, CTlf0, CTtv0, ts, time_); ADbl: potter_model_2006__ADbl(ADbl0, Qbt, Qp0, Ql, CDbf, CDblf0, CDpf0, CDlf0, CDbl, time_); CT_A: potter_model_2006__CT_A(CT_A0, CTblf0, CAf0, time_); CD_A: potter_model_2006__CD_A(CD_A0, CDblf0, CAf0, time_); CTblf: potter_model_2006__CTblf(CTblf0, CTbl, CT_A0); CDblf: potter_model_2006__CDblf(CDblf0, CDbl, CD_A0); CAf: potter_model_2006__CAf(CAf0, CA, CD_A0, CT_A0); ATl: potter_model_2006__ATl(ATl0, k1T, km5alpha, Vmax1, Ql, CTbl, CTlf0, PTl, time_); ADl: potter_model_2006__ADl(ADl0, k1D, km5alpha, Vmax1, Ql, CDbl, CTlf0, CDlf0, PDl, time_); CTlf: potter_model_2006__CTlf(CTlf0, CTl, PTl); CDlf: potter_model_2006__CDlf(CDlf0, CDl, PDl); ATif: potter_model_2006__ATif(ATif0, k1T, Qt, mu, PTif, CTblf0, CTif, CTst, CLH, PTst, ts, time_); ATst: potter_model_2006__ATst(ATst0, mu, CTif, PTst, CTst, time_); CTtv: potter_model_2006__CTtv(CTtv0, CTif, PTif); ATp: potter_model_2006__ATp(ATp0, km5alpha, Vmax0, Qp0, CTbl, CTpf0, time_); ADp: potter_model_2006__ADp(ADp0, km5alpha, Vmax0, Qp0, CDbl, CDpf0, CTpf0, time_); CT_R: potter_model_2006__CT_R(CT_R0, CTpf0, CRf0, time_); CD_R: potter_model_2006__CD_R(CD_R0, CDpf0, CRf0, time_); CDT: potter_model_2006__CDT(CDT0, CD_R0, CT_R0, time_); CDD: potter_model_2006__CDD(CDD0, CD_R0, time_); CTT: potter_model_2006__CTT(CTT0, CT_R0, time_); CDD5a: potter_model_2006__CDD5a(CDD5a0, CDD0, CDNA5af0, time_); CDDcd: potter_model_2006__CDDcd(CDDcd0, CDD0, CDNAcdf0, time_); CDDsec: potter_model_2006__CDDsec(CDDsec0, CDD0, CDNAsecf0, time_); CDDcp: potter_model_2006__CDDcp(CDDcp0, CDD0, CDNAcpf0, time_); CDT5a: potter_model_2006__CDT5a(CDT5a0, CDT0, CDNA5af0, time_); CDTcd: potter_model_2006__CDTcd(CDTcd0, CDT0, CDNAcdf0, time_); CDTsec: potter_model_2006__CDTsec(CDTsec0, CDT0, CDNAsecf0, time_); CDTcp: potter_model_2006__CDTcp(CDTcp0, CDT0, CDNAcpf0, time_); CTT5a: potter_model_2006__CTT5a(CTT5a0, CTT0, CDNA5af0, time_); CTTcd: potter_model_2006__CTTcd(CTTcd0, CTT0, CDNAcdf0, time_); CTTsec: potter_model_2006__CTTsec(CTTsec0, CTT0, CDNAsecf0, time_); CTTcp: potter_model_2006__CTTcp(CTTcp0, CTT0, CDNAcpf0, time_); CTpf: potter_model_2006__CTpf(CTpf0, CTp, CT_R0, CTT0, CDT0, CTTsec0, CDTsec0, CTTcd0, CDTcd0, CTTcp0, CDTcp0, CTT5a0, CDT5a0); CDpf: potter_model_2006__CDpf(CDpf0, CDp, CD_R0, CDD0, CDT0, CDDsec0, CDTsec0, CDDcd0, CDTcd0, CDDcp0, CDTcp0, CDD5a0, CDT5a0); CRf: potter_model_2006__CRf(CRf0, CR0, CT_R0, CD_R0, CTT0, CDD0, CDT0, CDNAcdf0, CDNAcpf0, CDNAsecf0, CDNA5af0); CDNAcdf: potter_model_2006__CDNAcdf(CDNAcdf0, CTTcd0, CDNAcd, CDTcd0, CDDcd0); CDNAsecf: potter_model_2006__CDNAsecf(CDNAsecf0, CTTsec0, CDNAsec, CDTsec0, CDDsec0); CDNA5af: potter_model_2006__CDNA5af(CDNA5af0, CTT5a0, CDNA5a, CDT5a0, CDD5a0); CDNAcpf: potter_model_2006__CDNAcpf(CDNAcpf0, CTTcp0, CDNAcp, CDTcp0, CDDcp0); DNAocp: potter_model_2006__DNAocp(DNAocp0, CTTcp0, CDNAcp, CDTcp0, CDDcp0); DNAosec: potter_model_2006__DNAosec(DNAosec0, CTTsec0, CDNAsec, CDTsec0, CDDsec0); DNAocd: potter_model_2006__DNAocd(DNAocd0, CTTcd0, CDNAcd, CDTcd0, CDDcd0); DNAo5a: potter_model_2006__DNAo5a(DNAo5a0, CTT5a0, CDNA5a, CDT5a0, CDD5a0); ATb: potter_model_2006__ATb(ATb0, Qb, CTb, CTblf0, PTb, time_); ADb: potter_model_2006__ADb(ADb0, Qbt, CDb, CDblf0, PDb, time_); ALH: potter_model_2006__ALH(ALH0, CTblf0, CDblf0, time_); AR: potter_model_2006__AR(AR0, CRf0, time_); CR: potter_model_2006__CR(CR0, AR0, Vp0); Qp: potter_model_2006__Qp(Qp0, VPC10, VPC2); Vmax: potter_model_2006__Vmax(Vmax2, DNAo5a0); VPC1: potter_model_2006__VPC1(VPC10, VPC1b, DNAocp0, DNAocd0, time_); VPL1: potter_model_2006__VPL1(VPL10, VPC1b, VPC10, DNAosec0, time_); Vp: potter_model_2006__Vp(Vp0, VPC10, VPC2, VPL10, VPL2); model_parameters: potter_model_2006__model_parameters(Qb, Ql, Qt, Qbt, k1T, k1D, km5alpha, ts, mu, Vmax1, Vmax0, PTif, PTst, PTl, PDl, PTb, PDb, CTbf, CTbl, CDbf, CDbl, CA, CTl, CDl, CTst, CLH, CTif, CDNAcd, CDNAsec, CDNAcp, CDNA5a, CTb, CDb, VPC1b, VPC2, VPL2, CTp, CDp, Qp0); end