//Created by libAntimony v2.4 model pasek_simurda_christe_2006__environment(time_) // Variable initializations: time_ = ; end model pasek_simurda_christe_2006__model_parameters(R, T, F, Nae, Cae, Ke, Vt, Vd, Vmyo, Sms, Smt, Cms, Cmt, Rst, VSRrel, VSRup) // Assignment Rules: Vt := 3.14159 * power(radiust, 2) * Lt_ * pt; Vd := Vc * 0.000075; Vmyo := Vc * 0.585; Sms := Smtot - 0.44E4 * Vc; Smt := Smtot - Sms; Cms := Sms * 1; Cmt := Smt * 1; Rst := ((Rot * Lt_) / 2) / (3.14159 * power(radiust, 2) * pt); VSRrel := Vc * 0.0035; VSRup := Vc * 0.0315; Vc := Smtot / 7850; pt := ptcm * Sms; Lt_ := Smt / (2 * 3.14159 * radiust * pt); // Variable initializations: R = 8310; T = 295; F = 96500; Nae = 140; Cae = 1.2; Ke = 5.4; Rot = 83.33; radiust = 150e-7; ptcm = 30000000; Smtot = 0.0001; end model pasek_simurda_christe_2006__i_circ(i_circ, Rst, Vms, Vmt) // Assignment Rules: i_circ := 1000 * (Vmt / Rst - Vms / Rst); // Variable initializations: Rst = ; Vms = ; Vmt = ; end model pasek_simurda_christe_2006__i_Stim(i_Stim, time_) // Assignment Rules: i_Stim := piecewise( stim_amplitude , ( geq(time_ - past, stim_offset)) && (time_ - past <= stim_offset + stim_duration ), 0 ); past := floor(time_ / stim_period) * stim_period; // Variable initializations: stim_offset = 0; stim_period = 0.2; stim_duration = 0.001; stim_amplitude = 0.0052; time_ = ; end model pasek_simurda_christe_2006__membrane_permeabilities(gNas, gCas, gKfs, gKsts, gK1s, gKbs, gKtos, gNabs, gCabs, i_pCa_maxs, i_NaK_maxs, i_NaCa_maxs, gNat, gCat, gKft, gKstt, gK1t, gKbt, gKtot, gNabt, gCabt, i_pCa_maxt, i_NaK_maxt, i_NaCa_maxt, Sms, Smt) // Assignment Rules: gNas := gNa * (Sms + Smt) * (1 - fNat); gCas := gCa * (Sms + Smt) * (1 - fCat); gKfs := gKf * (Sms + Smt) * (1 - fKft); gKsts := gKst * (Sms + Smt) * (1 - fKstt); gK1s := gK1 * (Sms + Smt) * (1 - fK1t); gKbs := gKb * (Sms + Smt) * (1 - fKbt); gKtos := gKto * (Sms + Smt) * (1 - fKtot); gNabs := gNab * (Sms + Smt) * (1 - fNabt); gCabs := gCab * (Sms + Smt) * (1 - fCabt); i_pCa_maxs := i_pCa_max * (Sms + Smt) * (1 - fpCat); i_NaK_maxs := i_NaK_max * (Sms + Smt) * (1 - fNaKt); i_NaCa_maxs := i_NaCa_max * (Sms + Smt) * (1 - fNaCat); gNat := gNa * (Sms + Smt) * fNat; gCat := gCa * (Sms + Smt) * fCat; gKft := gKf * (Sms + Smt) * fKft; gKstt := gKst * (Sms + Smt) * fKstt; gK1t := gK1 * (Sms + Smt) * fK1t; gKbt := gKb * (Sms + Smt) * fKbt; gKtot := gKto * (Sms + Smt) * fKtot; gNabt := gNab * (Sms + Smt) * fNabt; gCabt := gCab * (Sms + Smt) * fCabt; i_pCa_maxt := i_pCa_max * (Sms + Smt) * fpCat; i_NaK_maxt := i_NaK_max * (Sms + Smt) * fNaKt; i_NaCa_maxt := i_NaCa_max * (Sms + Smt) * fNaCat; // Variable initializations: gNa = 10; fNat = 0.56; gKf = 0.0145; fKft = 0.56; gKst = 0.07; fKstt = 0.76; gK1 = 0.24; fK1t = 0.56; gKb = 0.00138; fKbt = 0.56; gKto = 0.35; fKtot = 0.56; gNab = 0.0008015; fNabt = 0.56; gCab = 0.000648; fCabt = 0.56; gCa = 0.00021; fCat = 0.87; i_NaCa_max = 0.00018; fNaCat = 0.81; i_NaK_max = 1; fNaKt = 0.59; i_pCa_max = 0.85; fpCat = 0.56; Sms = ; Smt = ; end model pasek_simurda_christe_2006__i_Nas_m_gate(m, Vms, time_) // Assignment Rules: alpha_m := (117.26 * (Vms + 59.3)) / (1 - exp(-(0.55) * (Vms + 59.3))); beta_m := 3800 * exp(-(0.072) * (Vms + 61)); // Rate Rules: m' = alpha_m * (1 - m) - beta_m * m; // Variable initializations: m = 1.4956482e-6; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Nas_h_gate(h, Vms, time_) // Assignment Rules: alpha_h := 284.4 / (1 + exp(0.0812 * (Vms + 115.9))); beta_h := (18.77 * (Vms + 64.4)) / (1 - exp(-(0.22) * (Vms + 64.4))); // Rate Rules: h' = alpha_h * (1 - h) - beta_h * h; // Variable initializations: h = 5.8925181e-1; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Nas(i_Nas, E_Nas, gNas, Nai, Nae, Ki, Ke, R, F, T, time_, Vms, m, h) // Sub-modules, and any changes to those submodules: i_Nas_m_gate: pasek_simurda_christe_2006__i_Nas_m_gate(m, Vms, time_); i_Nas_h_gate: pasek_simurda_christe_2006__i_Nas_h_gate(h, Vms, time_); // Assignment Rules: i_Nas := gNas * power(m, 3) * h * (Vms - (ln((Nae + 0.12 * Ke) / (Nai + 0.12 * Ki)) * R * T) / F); E_Nas := (ln(Nae / Nai) * R * T) / F; // Variable initializations: gNas = ; Nai = ; Nae = ; Ki = ; Ke = ; R = ; F = ; T = ; end model pasek_simurda_christe_2006__i_Nat_m_gate(m, Vmt, time_) // Assignment Rules: alpha_m := (117.26 * (Vmt + 59.3)) / (1 - exp(-(0.55) * (Vmt + 59.3))); beta_m := 3800 * exp(-(0.072) * (Vmt + 61)); // Rate Rules: m' = alpha_m * (1 - m) - beta_m * m; // Variable initializations: m = 1.4956545e-6; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Nat_h_gate(h, Vmt, time_) // Assignment Rules: alpha_h := 284.4 / (1 + exp(0.0812 * (Vmt + 115.9))); beta_h := (18.77 * (Vmt + 64.4)) / (1 - exp(-(0.22) * (Vmt + 64.4))); // Rate Rules: h' = alpha_h * (1 - h) - beta_h * h; // Variable initializations: h = 5.8924925e-1; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Nat(i_Nat, E_Nat, gNat, Nai, Nat, Ki, Kt, R, F, T, time_, Vmt, m, h) // Sub-modules, and any changes to those submodules: i_Nat_m_gate: pasek_simurda_christe_2006__i_Nat_m_gate(m, Vmt, time_); i_Nat_h_gate: pasek_simurda_christe_2006__i_Nat_h_gate(h, Vmt, time_); // Assignment Rules: i_Nat := gNat * power(m, 3) * h * (Vmt - (ln((Nat + 0.12 * Kt) / (Nai + 0.12 * Ki)) * R * T) / F); E_Nat := (ln(Nat / Nai) * R * T) / F; // Variable initializations: gNat = ; Nai = ; Nat = ; Ki = ; Kt = ; R = ; F = ; T = ; end model pasek_simurda_christe_2006__i_Cas(i_Cas, E_Cas, gCas, time_, R, T, F, Vms, Cass, Cae, Cai) // Assignment Rules: i_Cas := ((((gCas * 4 * Vms * power(F, 2)) / (R * T)) * (Cass * exp((2 * Vms * F) / (R * T)) - 0.341 * Cae)) / (exp((2 * Vms * F) / (R * T)) - 1)) * Co * ((0.9 + Ccast / 10) * C1 + (0.1 - Ccast / 10) * C2); E_Cas := (ln(Cae / Cai) * R * T) / (2 * F); tauCo := 0.00025 + 0.00305 * exp(-(0.0045) * power(Vms + 7, 2)) + 0.00105 * exp(-(0.002) * power(Vms - 18, 2)); tauC1 := 0.105 * exp(-power((Vms + 45) / 12, 2)) + 0.04 / (1 + exp((- Vms + 25) / 25)) + 0.015 / (1 + exp((Vms + 75) / 25)); tauC2 := 0.041 * exp(-power((Vms + 47) / 12, 2)) + 0.08 / (1 + exp(-(Vms + 55) / 5)) + 0.015 / (1 + exp((Vms + 75) / 25)); Coinf := 1 / (1 + exp(-(Vms + 15.3) / 5)); Ccastinf := 1 / (1 + Cass / 0.01); C1inf := 1 / (1 + exp((Vms + 26.7) / 5.4)); C2inf := C1inf; // Rate Rules: Co' = (Coinf - Co) / tauCo; C1' = (C1inf - C1) / tauC1; C2' = (C2inf - C2) / tauC2; Ccast' = (Ccastinf - Ccast) / tauCcast; // Variable initializations: Co = 2.2292624e-6; C1 = 9.999433e-1; C2 = 9.9994746e-1; tauCcast = 0.009; Ccast = 9.6561949e-3; gCas = ; time_ = ; R = ; T = ; F = ; Vms = ; Cass = ; Cae = ; Cai = ; end model pasek_simurda_christe_2006__i_Cat(i_Cat, E_Cat, gCat, time_, R, T, F, Vmt, Cass, Cat, Cai) // Assignment Rules: i_Cat := ((((gCat * 4 * Vmt * power(F, 2)) / (R * T)) * (Cass * exp((2 * Vmt * F) / (R * T)) - 0.341 * Cat)) / (exp((2 * Vmt * F) / (R * T)) - 1)) * Co * ((0.9 + Ccast / 10) * C1 + (0.1 - Ccast / 10) * C2); E_Cat := (ln(Cat / Cai) * R * T) / (2 * F); tauCo := 0.00025 + 0.00305 * exp(-(0.0045) * power(Vmt + 7, 2)) + 0.00105 * exp(-(0.002) * power(Vmt - 18, 2)); tauC1 := 0.105 * exp(-power((Vmt + 45) / 12, 2)) + 0.04 / (1 + exp((- Vmt + 25) / 25)) + 0.015 / (1 + exp((Vmt + 75) / 25)); tauC2 := 0.041 * exp(-power((Vmt + 47) / 12, 2)) + 0.08 / (1 + exp(-(Vmt + 55) / 5)) + 0.015 / (1 + exp((Vmt + 75) / 25)); Coinf := 1 / (1 + exp(-(Vmt + 15.3) / 5)); Ccastinf := 1 / (1 + Cass / 0.01); C1inf := 1 / (1 + exp((Vmt + 26.7) / 5.4)); C2inf := C1inf; // Rate Rules: Co' = (Coinf - Co) / tauCo; C1' = (C1inf - C1) / tauC1; C2' = (C2inf - C2) / tauC2; Ccast' = (Ccastinf - Ccast) / tauCcast; // Variable initializations: Co = 2.2292655e-6; C1 = 9.999433e-1; C2 = 9.9994746e-1; tauCcast = 0.009; Ccast = 9.6561949e-1; gCat = ; time_ = ; R = ; T = ; F = ; Vmt = ; Cass = ; Cat = ; Cai = ; end model pasek_simurda_christe_2006__i_Ktos_rs_gate(rs, Vms, time_) // Assignment Rules: taurs := 1 / (45.16 * exp(0.03577 * (Vms + 50)) + 98.9 * exp(-(0.1) * (Vms + 38))); rinfs := 1 / (1 + exp((Vms + 10.6) / -(11.42))); // Rate Rules: rs' = (rinfs - rs) / taurs; // Variable initializations: rs = 2.2169306e-3; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Ktos_ss_gate(ss, Vms, time_) // Assignment Rules: tauss := 0.35 * exp(-power(0.0666 * (Vms + 70), 2)) + 0.035; sinfs := 1 / (1 + exp((Vms + 45.3) / 6.8841)); // Rate Rules: ss' = (sinfs - ss) / tauss; // Variable initializations: ss = 6.2597631e-1; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Ktos_sss_gate(sss, Vms, time_) // Assignment Rules: tausss := 3.7 * exp(-power(0.0333 * (Vms + 70), 2)) + 0.035; ssinfs := 1 / (1 + exp((Vms + 45.3) / 6.8841)); // Rate Rules: sss' = (ssinfs - sss) / tausss; // Variable initializations: sss = 1.6854927e-1; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Ktos(i_Ktos, E_Ks, gKtos, time_, Vms, R, F, T, Ke, Ki, rs, ss, sss) // Sub-modules, and any changes to those submodules: i_Ktos_rs_gate: pasek_simurda_christe_2006__i_Ktos_rs_gate(rs, Vms, time_); i_Ktos_ss_gate: pasek_simurda_christe_2006__i_Ktos_ss_gate(ss, Vms, time_); i_Ktos_sss_gate: pasek_simurda_christe_2006__i_Ktos_sss_gate(sss, Vms, time_); // Assignment Rules: i_Ktos := gKtos * rs * (0.886 * ss + 0.114 * sss) * (Vms - E_Ks); E_Ks := (ln(Ke / Ki) * R * T) / F; // Variable initializations: gKtos = ; R = ; F = ; T = ; Ke = ; Ki = ; end model pasek_simurda_christe_2006__i_Ktot_rt_gate(rt, Vmt, time_) // Assignment Rules: taurt := 1 / (45.16 * exp(0.03577 * (Vmt + 50)) + 98.9 * exp(-(0.1) * (Vmt + 38))); rinft := 1 / (1 + exp((Vmt + 10.6) / -(11.42))); // Rate Rules: rt' = (rinft - rt) / taurt; // Variable initializations: rt = 2.216932e-3; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Ktot_st_gate(st, Vmt, time_) // Assignment Rules: taust := 0.35 * exp(-power(0.0666 * (Vmt + 70), 2)) + 0.035; sinft := 1 / (1 + exp((Vmt + 45.3) / 6.8841)); // Rate Rules: st' = (sinft - st) / taust; // Variable initializations: st = 6.2597784e-1; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Ktot_sst_gate(sst, Vmt, time_) // Assignment Rules: tausst := 3.7 * exp(-power(0.0333 * (Vmt + 70), 2)) + 0.035; ssinft := 1 / (1 + exp((Vmt + 45.3) / 6.8841)); // Rate Rules: sst' = (ssinft - sst) / tausst; // Variable initializations: sst = 1.6852676e-1; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Ktot(i_Ktot, E_Kt, gKtot, time_, Vmt, R, F, T, Kt, Ki, rt, st, sst) // Sub-modules, and any changes to those submodules: i_Ktot_rt_gate: pasek_simurda_christe_2006__i_Ktot_rt_gate(rt, Vmt, time_); i_Ktot_st_gate: pasek_simurda_christe_2006__i_Ktot_st_gate(st, Vmt, time_); i_Ktot_sst_gate: pasek_simurda_christe_2006__i_Ktot_sst_gate(sst, Vmt, time_); // Assignment Rules: i_Ktot := gKtot * rt * (0.886 * st + 0.114 * sst) * (Vmt - E_Kt); E_Kt := (ln(Kt / Ki) * R * T) / F; // Variable initializations: gKtot = ; R = ; F = ; T = ; Kt = ; Ki = ; end model pasek_simurda_christe_2006__i_Ksts_rsts_gate(rsts, Vms, time_) // Assignment Rules: taursts := 10 / (45.16 * exp(0.03577 * (Vms + 50)) + 98.9 * exp(-(0.1) * (Vms + 38))); rstinfs := 1 / (1 + exp(-(Vms + 11.5) / 11.82)); // Rate Rules: rsts' = (rstinfs - rsts) / taursts; // Variable initializations: rsts = 2.9408514e-3; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Ksts_ssts_gate(ssts, Vms, time_) // Assignment Rules: sstinfs := 1 / (1 + exp((Vms + 87.5) / 10.3)); // Rate Rules: ssts' = (sstinfs - ssts) / taussts; // Variable initializations: ssts = 2.4351431e-1; taussts = 2.1; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Ksts(i_Ksts, gKsts, time_, Vms, E_Ks, rsts, ssts) // Sub-modules, and any changes to those submodules: i_Ksts_rsts_gate: pasek_simurda_christe_2006__i_Ksts_rsts_gate(rsts, Vms, time_); i_Ksts_ssts_gate: pasek_simurda_christe_2006__i_Ksts_ssts_gate(ssts, Vms, time_); // Assignment Rules: i_Ksts := gKsts * rsts * ssts * (Vms - E_Ks); // Variable initializations: gKsts = ; E_Ks = ; end model pasek_simurda_christe_2006__i_Kstt_rstt_gate(rstt, Vmt, time_) // Assignment Rules: taurstt := 10 / (45.16 * exp(0.03577 * (Vmt + 50)) + 98.9 * exp(-(0.1) * (Vmt + 38))); rstinft := 1 / (1 + exp(-(Vmt + 11.5) / 11.82)); // Rate Rules: rstt' = (rstinft - rstt) / taurstt; // Variable initializations: rstt = 2.9408534e-3; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Kstt_sstt_gate(sstt, Vmt, time_) // Assignment Rules: sstinft := 1 / (1 + exp((Vmt + 87.5) / 10.3)); // Rate Rules: sstt' = (sstinft - sstt) / tausstt; // Variable initializations: sstt = 2.4351426e-1; tausstt = 2.1; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Kstt(i_Kstt, gKstt, time_, Vmt, E_Kt, rstt, sstt) // Sub-modules, and any changes to those submodules: i_Kstt_rstt_gate: pasek_simurda_christe_2006__i_Kstt_rstt_gate(rstt, Vmt, time_); i_Kstt_sstt_gate: pasek_simurda_christe_2006__i_Kstt_sstt_gate(sstt, Vmt, time_); // Assignment Rules: i_Kstt := gKstt * rstt * sstt * (Vmt - E_Kt); // Variable initializations: gKstt = ; E_Kt = ; end model pasek_simurda_christe_2006__i_Kfs_qs_gate(qs, Vms, time_) // Assignment Rules: tauqs := 1 / (0.11885 * exp((Vms + 80) / 28.37) + 0.5623 * exp(-(Vms + 80) / 14.19)); qinfs := 1 / (1 + exp((Vms + 138.6) / 10.48)); // Rate Rules: qs' = (qinfs - qs) / tauqs; // Variable initializations: qs = 2.3879297e-3; Vms = ; time_ = ; end model pasek_simurda_christe_2006__i_Kfs(i_Kfs, gKfs, time_, Vms, E_Ks, E_Nas, qs) // Sub-modules, and any changes to those submodules: i_Kfs_qs_gate: pasek_simurda_christe_2006__i_Kfs_qs_gate(qs, Vms, time_); // Assignment Rules: i_Kfs := gKfs * qs * (0.2 * (Vms - E_Nas) + 0.8 * (Vms - E_Ks)); // Variable initializations: gKfs = ; E_Ks = ; E_Nas = ; end model pasek_simurda_christe_2006__i_Kft_qt_gate(qt, Vmt, time_) // Assignment Rules: tauqt := 1 / (0.11885 * exp((Vmt + 80) / 28.37) + 0.5623 * exp(-(Vmt + 80) / 14.19)); qinft := 1 / (1 + exp((Vmt + 138.6) / 10.48)); // Rate Rules: qt' = (qinft - qt) / tauqt; // Variable initializations: qt = 2.3878574e-3; Vmt = ; time_ = ; end model pasek_simurda_christe_2006__i_Kft(i_Kft, gKft, time_, Vmt, E_Kt, E_Nat, qt) // Sub-modules, and any changes to those submodules: i_Kft_qt_gate: pasek_simurda_christe_2006__i_Kft_qt_gate(qt, Vmt, time_); // Assignment Rules: i_Kft := gKft * qt * (0.2 * (Vmt - E_Nat) + 0.8 * (Vmt - E_Kt)); // Variable initializations: gKft = ; E_Kt = ; E_Nat = ; end model pasek_simurda_christe_2006__i_K1s(i_K1s, gK1s, time_, Vms, R, F, T, Ke, E_Ks) // Assignment Rules: i_K1s := (gK1s * ((Vms - E_Ks) - 1.73)) / (1 + exp(((1.613 * F) / (R * T)) * ((Vms - E_Ks) - 1.73)) * (1 + exp((Ke - 0.9988) / -(0.124)))); // Variable initializations: gK1s = ; time_ = ; Vms = ; R = ; F = ; T = ; Ke = ; E_Ks = ; end model pasek_simurda_christe_2006__i_K1t(i_K1t, gK1t, time_, Vmt, R, F, T, Kt, E_Kt) // Assignment Rules: i_K1t := (gK1t * ((Vmt - E_Kt) - 1.73)) / (1 + exp(((1.613 * F) / (R * T)) * ((Vmt - E_Kt) - 1.73)) * (1 + exp((Kt - 0.9988) / -(0.124)))); // Variable initializations: gK1t = ; time_ = ; Vmt = ; R = ; F = ; T = ; Kt = ; E_Kt = ; end model pasek_simurda_christe_2006__i_Nabs(i_Nabs, gNabs, Vms, E_Nas) // Assignment Rules: i_Nabs := gNabs * (Vms - E_Nas); // Variable initializations: gNabs = ; Vms = ; E_Nas = ; end model pasek_simurda_christe_2006__i_Nabt(i_Nabt, gNabt, Vmt, E_Nat) // Assignment Rules: i_Nabt := gNabt * (Vmt - E_Nat); // Variable initializations: gNabt = ; Vmt = ; E_Nat = ; end model pasek_simurda_christe_2006__i_Cabs(i_Cabs, gCabs, Vms, E_Cas) // Assignment Rules: i_Cabs := gCabs * (Vms - E_Cas); // Variable initializations: gCabs = ; Vms = ; E_Cas = ; end model pasek_simurda_christe_2006__i_Cabt(i_Cabt, gCabt, Vmt, E_Cat) // Assignment Rules: i_Cabt := gCabt * (Vmt - E_Cat); // Variable initializations: gCabt = ; Vmt = ; E_Cat = ; end model pasek_simurda_christe_2006__i_Kbs(i_Kbs, gKbs, Vms, E_Ks) // Assignment Rules: i_Kbs := gKbs * (Vms - E_Ks); // Variable initializations: gKbs = ; Vms = ; E_Ks = ; end model pasek_simurda_christe_2006__i_Kbt(i_Kbt, gKbt, Vmt, E_Kt) // Assignment Rules: i_Kbt := gKbt * (Vmt - E_Kt); // Variable initializations: gKbt = ; Vmt = ; E_Kt = ; end model pasek_simurda_christe_2006__i_NaCas(i_NaCas, i_NaCa_maxs, Nai, Nae, Cai, Cae, Vms) // Assignment Rules: i_NaCas := (i_NaCa_maxs * (exp(0.0187 * Vms) * power(Nai, 3) * Cae - exp(-(0.0187) * Vms) * power(Nae, 3) * Cai)) / (1 + 0.0001 * (power(Nae, 3) * Cai + power(Nai, 3) * Cae)); // Variable initializations: i_NaCa_maxs = ; Nai = ; Nae = ; Cai = ; Cae = ; Vms = ; end model pasek_simurda_christe_2006__i_NaCat(i_NaCat, i_NaCa_maxt, Nai, Nat, Cai, Cat, Vmt) // Assignment Rules: i_NaCat := (i_NaCa_maxt * (exp(0.0187 * Vmt) * power(Nai, 3) * Cat - exp(-(0.0187) * Vmt) * power(Nat, 3) * Cai)) / (1 + 0.0001 * (power(Nat, 3) * Cai + power(Nai, 3) * Cat)); // Variable initializations: i_NaCa_maxt = ; Nai = ; Nat = ; Cai = ; Cat = ; Vmt = ; end model pasek_simurda_christe_2006__i_NaKs(i_NaKs, i_NaK_maxs, Ke, Nae, Nai, R, F, T, Vms) // Assignment Rules: i_NaKs := ((((i_NaK_maxs / (1 + 0.1245 * exp((-(0.1) * Vms * F) / (R * T)) + ((0.0365 * 1) / 7) * (exp(Nae / 67.3) - 1) * exp((- Vms * F) / (R * T)))) * 1) / (1 + power(10 / Nai, 1.5))) * Ke) / (Ke + 1.5); // Variable initializations: i_NaK_maxs = ; Ke = ; Nae = ; Nai = ; R = ; F = ; T = ; Vms = ; end model pasek_simurda_christe_2006__i_NaKt(i_NaKt, i_NaK_maxt, Kt, Nat, Nai, R, F, T, Vmt) // Assignment Rules: i_NaKt := ((((i_NaK_maxt / (1 + 0.1245 * exp((-(0.1) * Vmt * F) / (R * T)) + ((0.0365 * 1) / 7) * (exp(Nat / 67.3) - 1) * exp((- Vmt * F) / (R * T)))) * 1) / (1 + power(10 / Nai, 1.5))) * Kt) / (Kt + 1.5); // Variable initializations: i_NaK_maxt = ; Kt = ; Nat = ; Nai = ; R = ; F = ; T = ; Vmt = ; end model pasek_simurda_christe_2006__i_pCas(i_pCas, i_pCa_maxs, Cai) // Assignment Rules: i_pCas := (i_pCa_maxs * Cai) / (0.0004 + Cai); // Variable initializations: i_pCa_maxs = ; Cai = ; end model pasek_simurda_christe_2006__i_pCat(i_pCat, i_pCa_maxt, Cai) // Assignment Rules: i_pCat := (i_pCa_maxt * Cai) / (0.0004 + Cai); // Variable initializations: i_pCa_maxt = ; Cai = ; end model pasek_simurda_christe_2006__t_tubular_ion_fluxes(JteNa, JteCa, JteK, Vt, Nat, Cat, Kt, Nae, Cae, Ke) // Assignment Rules: JteNa := ((1 * Vt) / tauNa) * (Nat - Nae); JteCa := ((1 * Vt) / tauCa) * (Cat - Cae); JteK := ((1 * Vt) / tauK) * (Kt - Ke); // Variable initializations: tauNa = 0.15; tauCa = 0.5; tauK = 0.15; Vt = ; Nat = ; Cat = ; Kt = ; Nae = ; Cae = ; Ke = ; end model pasek_simurda_christe_2006__JCaSRup(JCaSRup, Cai, CaSRup, Vmyo) // Assignment Rules: JCaSRup := (1 * Vmyo * (0.04 * 10 * power(Cai / 0.000168, 1.2) - (0.9 * CaSRup) / 3.29)) / (1 + power(Cai / 0.000168, 1.2) + CaSRup / 3.29); // Variable initializations: Cai = ; CaSRup = ; Vmyo = ; end model pasek_simurda_christe_2006__Jtr(Jtr, CaSRrel, CaSRup, VSRrel) // Assignment Rules: Jtr := ((1 * VSRrel) / tautr) * (CaSRup - CaSRrel); // Variable initializations: tautr = 0.03448; CaSRrel = ; CaSRup = ; VSRrel = ; end model pasek_simurda_christe_2006__JCaSRrel(JCaSRrel, time_, VSRrel, Cass, CaSRrel) // Assignment Rules: JCaSRrel := 1800 * VSRrel * (F2 + F3) * (CaSRrel - Cass); kap := 12.15E+12; kbp := 4.05E+9; // Rate Rules: F1' = F2 * kam - F1 * kap * power(Cass, 4); F2' = (F1 * kap * power(Cass, 4) + F3 * kbm + F4 * kcm) - F2 * (kam + kbp * power(Cass, 3) + kcp); F3' = F2 * kbp * power(Cass, 3) - F3 * kbm; F4' = F2 * kcp - F4 * kcm; // Variable initializations: kam = 576; kbm = 1930; kcp = 18; kcm = 0.8; F1 = 1.4612276e-1; F2 = 1.0496025e-3; F3 = 9.4214405e-8; F4 = 8.5283034e-1; time_ = ; VSRrel = ; Cass = ; CaSRrel = ; end model pasek_simurda_christe_2006__JCad(JCad, Cai, Cass, Vmyo) // Assignment Rules: JCad := (1 * (Cass - Cai) * Vmyo) / taud; // Variable initializations: taud = 0.003125; Cai = ; Cass = ; Vmyo = ; end model pasek_simurda_christe_2006__CaSRup(CaSRup, JCaSRup, Jtr, VSRup, time_) // Rate Rules: CaSRup' = (JCaSRup - Jtr) / (1 * VSRup); // Variable initializations: CaSRup = 1.5374352e0; JCaSRup = ; Jtr = ; VSRup = ; time_ = ; end model pasek_simurda_christe_2006__CaSRrel(CaSRrel, Jtr, JCaSRrel, VSRrel, time_) // Rate Rules: CaSRrel' = ((1 / (1 + (15 * 0.8) / power(0.8 + CaSRrel, 2))) * (Jtr - JCaSRrel)) / VSRrel; // Variable initializations: CaSRrel = 1.335789e0; Jtr = ; JCaSRrel = ; VSRrel = ; time_ = ; end model pasek_simurda_christe_2006__ion_concentrations(Nai, Cai, Ki, Nat, Cat, Kt, Cass, Vd, VSRrel, VSRup, Vt, Vmyo, time_, F, i_Stim, i_Nas, i_Cas, i_Nabs, i_NaCas, i_NaKs, i_Kfs, i_Kbs, i_K1s, i_Ktos, i_Ksts, i_pCas, i_Cabs, i_Nat, i_Cat, i_Nabt, i_NaCat, i_NaKt, i_Kft, i_Kbt, i_K1t, i_Ktot, i_Kstt, i_pCat, i_Cabt, JCaSRup, JCaSRrel, JCad, Jtr, JteNa, JteCa, JteK) // Assignment Rules: dBTRH := 20000 * Cai * (1 - BTRH) - 0.07 * BTRH; dBTRL := 40000 * Cai * (1 - BTRL) - BTRL * 40; // Rate Rules: Nai' = -(i_Nas + i_Nat + i_Nabs + i_Nabt + 3 * i_NaCas + 3 * i_NaCat + 3 * i_NaKs + 3 * i_NaKt) / (F * Vmyo); Cai' = (1 / (1 + (0.05 * 0.00238) / power(0.00238 + Cai, 2))) * ((((-(2) * (i_NaCas + i_NaCat) + i_Cabs + i_Cabt + i_pCas + i_pCat) / (-(2) * F * Vmyo) + (1 * (JCad - JCaSRup)) / Vmyo) - dBTRH * 0.14) - dBTRL * 0.07); Ki' = -((((- i_Stim + i_Kfs + i_Kft + i_Ksts + i_Kstt + i_K1s + i_K1t + i_Kbs + i_Kbt) - 2 * i_NaKs) - 2 * i_NaKt) + i_Ktos + i_Ktot) / (F * Vmyo); Nat' = ((i_Nat + i_Nabt + 3 * i_NaCat + 3 * i_NaKt) / F - 1 * JteNa) / Vt; Cat' = ((-(2) * i_NaCat + i_Cat + i_Cabt + i_pCat) / (2 * F) - 1 * JteCa) / Vt; Kt' = ((((i_Kft + i_Kstt + i_K1t + i_Kbt) - 2 * i_NaKt) + i_Ktot) / F - 1 * JteK) / Vt; Cass' = (1 / (1 + (0.05 * 0.00238) / power(0.00238 + Cass, 2))) * ((-(i_Cas + i_Cat) / (2 * F * Vd) + (1 * JCaSRrel) / Vd) - (1 * JCad) / Vd); BTRH' = dBTRH; BTRL' = dBTRL; // Variable initializations: Nai = 1.9426568e1; Cai = 2.2847292e-4; Ki = 1.2494394e2; Nat = 1.3998172e2; Cat = 1.1906442e0; Kt = 5.3450263e0; Cass = 3.4938669e-4; BTRH = 9.9121461e-1; BTRL = 1.9925769e-2; Vd = ; VSRrel = ; VSRup = ; Vt = ; Vmyo = ; time_ = ; F = ; i_Stim = ; i_Nas = ; i_Cas = ; i_Nabs = ; i_NaCas = ; i_NaKs = ; i_Kfs = ; i_Kbs = ; i_K1s = ; i_Ktos = ; i_Ksts = ; i_pCas = ; i_Cabs = ; i_Nat = ; i_Cat = ; i_Nabt = ; i_NaCat = ; i_NaKt = ; i_Kft = ; i_Kbt = ; i_K1t = ; i_Ktot = ; i_Kstt = ; i_pCat = ; i_Cabt = ; JCaSRup = ; JCaSRrel = ; JCad = ; Jtr = ; JteNa = ; JteCa = ; JteK = ; end model pasek_simurda_christe_2006__Vms(Vms, Cms, i_circ, i_Stim, time_, i_Nas, i_Cas, i_Ktos, i_Ksts, i_Kfs, i_K1s, i_Nabs, i_Cabs, i_Kbs, i_NaKs, i_NaCas, i_pCas) // Rate Rules: Vms' = (1000 * ((i_Stim + i_circ) - (i_Nas + i_Cas + i_Ktos + i_Ksts + i_Kfs + i_K1s + i_Nabs + i_Cabs + i_Kbs + i_NaKs + i_NaCas + i_pCas))) / Cms; // Variable initializations: Vms = -8.0370197e1; Cms = ; i_circ = ; i_Stim = ; time_ = ; i_Nas = ; i_Cas = ; i_Ktos = ; i_Ksts = ; i_Kfs = ; i_K1s = ; i_Nabs = ; i_Cabs = ; i_Kbs = ; i_NaKs = ; i_NaCas = ; i_pCas = ; end model pasek_simurda_christe_2006__Vmt(Vmt, Cmt, i_circ, time_, i_Nat, i_Cat, i_Ktot, i_Kstt, i_Kft, i_K1t, i_Nabt, i_Cabt, i_Kbt, i_NaKt, i_NaCat, i_pCat) // Rate Rules: Vmt' = (1000 * -(i_circ + i_Nat + i_Cat + i_Ktot + i_Kstt + i_Kft + i_K1t + i_Nabt + i_Cabt + i_Kbt + i_NaKt + i_NaCat + i_pCat)) / Cmt; // Variable initializations: Vmt = -8.037019e1; Cmt = ; i_circ = ; time_ = ; i_Nat = ; i_Cat = ; i_Ktot = ; i_Kstt = ; i_Kft = ; i_K1t = ; i_Nabt = ; i_Cabt = ; i_Kbt = ; i_NaKt = ; i_NaCat = ; i_pCat = ; end model *pasek_simurda_christe_2006____main() // Sub-modules, and any changes to those submodules: environment: pasek_simurda_christe_2006__environment(time_); model_parameters: pasek_simurda_christe_2006__model_parameters(R, T, F, Nae, Cae, Ke, Vt, Vd, Vmyo, Sms, Smt, Cms, Cmt, Rst, VSRrel, VSRup); i_circ: pasek_simurda_christe_2006__i_circ(i_circ0, Rst, Vms0, Vmt0); i_Stim: pasek_simurda_christe_2006__i_Stim(i_Stim0, time_); membrane_permeabilities: pasek_simurda_christe_2006__membrane_permeabilities(gNas, gCas, gKfs, gKsts, gK1s, gKbs, gKtos, gNabs, gCabs, i_pCa_maxs, i_NaK_maxs, i_NaCa_maxs, gNat, gCat, gKft, gKstt, gK1t, gKbt, gKtot, gNabt, gCabt, i_pCa_maxt, i_NaK_maxt, i_NaCa_maxt, Sms, Smt); i_Nas: pasek_simurda_christe_2006__i_Nas(i_Nas0, E_Nas, gNas, Nai, Nae, Ki, Ke, R, F, T, time_, Vms0, m, h); i_Nat: pasek_simurda_christe_2006__i_Nat(i_Nat0, E_Nat, gNat, Nai, Nat, Ki, Kt, R, F, T, time_, Vmt0, m0, h0); i_Cas: pasek_simurda_christe_2006__i_Cas(i_Cas0, E_Cas, gCas, time_, R, T, F, Vms0, Cass, Cae, Cai); i_Cat: pasek_simurda_christe_2006__i_Cat(i_Cat0, E_Cat, gCat, time_, R, T, F, Vmt0, Cass, Cat, Cai); i_Ktos: pasek_simurda_christe_2006__i_Ktos(i_Ktos0, E_Ks, gKtos, time_, Vms0, R, F, T, Ke, Ki, rs, ss, sss); i_Ktot: pasek_simurda_christe_2006__i_Ktot(i_Ktot0, E_Kt, gKtot, time_, Vmt0, R, F, T, Kt, Ki, rt, st, sst); i_Ksts: pasek_simurda_christe_2006__i_Ksts(i_Ksts0, gKsts, time_, Vms0, E_Ks, rsts, ssts); i_Kstt: pasek_simurda_christe_2006__i_Kstt(i_Kstt0, gKstt, time_, Vmt0, E_Kt, rstt, sstt); i_Kfs: pasek_simurda_christe_2006__i_Kfs(i_Kfs0, gKfs, time_, Vms0, E_Ks, E_Nas, qs); i_Kft: pasek_simurda_christe_2006__i_Kft(i_Kft0, gKft, time_, Vmt0, E_Kt, E_Nat, qt); i_K1s: pasek_simurda_christe_2006__i_K1s(i_K1s0, gK1s, time_, Vms0, R, F, T, Ke, E_Ks); i_K1t: pasek_simurda_christe_2006__i_K1t(i_K1t0, gK1t, time_, Vmt0, R, F, T, Kt, E_Kt); i_Nabs: pasek_simurda_christe_2006__i_Nabs(i_Nabs0, gNabs, Vms0, E_Nas); i_Nabt: pasek_simurda_christe_2006__i_Nabt(i_Nabt0, gNabt, Vmt0, E_Nat); i_Cabs: pasek_simurda_christe_2006__i_Cabs(i_Cabs0, gCabs, Vms0, E_Cas); i_Cabt: pasek_simurda_christe_2006__i_Cabt(i_Cabt0, gCabt, Vmt0, E_Cat); i_Kbs: pasek_simurda_christe_2006__i_Kbs(i_Kbs0, gKbs, Vms0, E_Ks); i_Kbt: pasek_simurda_christe_2006__i_Kbt(i_Kbt0, gKbt, Vmt0, E_Kt); i_NaCas: pasek_simurda_christe_2006__i_NaCas(i_NaCas0, i_NaCa_maxs, Nai, Nae, Cai, Cae, Vms0); i_NaCat: pasek_simurda_christe_2006__i_NaCat(i_NaCat0, i_NaCa_maxt, Nai, Nat, Cai, Cat, Vmt0); i_NaKs: pasek_simurda_christe_2006__i_NaKs(i_NaKs0, i_NaK_maxs, Ke, Nae, Nai, R, F, T, Vms0); i_NaKt: pasek_simurda_christe_2006__i_NaKt(i_NaKt0, i_NaK_maxt, Kt, Nat, Nai, R, F, T, Vmt0); i_pCas: pasek_simurda_christe_2006__i_pCas(i_pCas0, i_pCa_maxs, Cai); i_pCat: pasek_simurda_christe_2006__i_pCat(i_pCat0, i_pCa_maxt, Cai); t_tubular_ion_fluxes: pasek_simurda_christe_2006__t_tubular_ion_fluxes(JteNa, JteCa, JteK, Vt, Nat, Cat, Kt, Nae, Cae, Ke); JCaSRup: pasek_simurda_christe_2006__JCaSRup(JCaSRup0, Cai, CaSRup0, Vmyo); Jtr: pasek_simurda_christe_2006__Jtr(Jtr0, CaSRrel0, CaSRup0, VSRrel); JCaSRrel: pasek_simurda_christe_2006__JCaSRrel(JCaSRrel0, time_, VSRrel, Cass, CaSRrel0); JCad: pasek_simurda_christe_2006__JCad(JCad0, Cai, Cass, Vmyo); CaSRup: pasek_simurda_christe_2006__CaSRup(CaSRup0, JCaSRup0, Jtr0, VSRup, time_); CaSRrel: pasek_simurda_christe_2006__CaSRrel(CaSRrel0, Jtr0, JCaSRrel0, VSRrel, time_); ion_concentrations: pasek_simurda_christe_2006__ion_concentrations(Nai, Cai, Ki, Nat, Cat, Kt, Cass, Vd, VSRrel, VSRup, Vt, Vmyo, time_, F, i_Stim0, i_Nas0, i_Cas0, i_Nabs0, i_NaCas0, i_NaKs0, i_Kfs0, i_Kbs0, i_K1s0, i_Ktos0, i_Ksts0, i_pCas0, i_Cabs0, i_Nat0, i_Cat0, i_Nabt0, i_NaCat0, i_NaKt0, i_Kft0, i_Kbt0, i_K1t0, i_Ktot0, i_Kstt0, i_pCat0, i_Cabt0, JCaSRup0, JCaSRrel0, JCad0, Jtr0, JteNa, JteCa, JteK); Vms: pasek_simurda_christe_2006__Vms(Vms0, Cms, i_circ0, i_Stim0, time_, i_Nas0, i_Cas0, i_Ktos0, i_Ksts0, i_Kfs0, i_K1s0, i_Nabs0, i_Cabs0, i_Kbs0, i_NaKs0, i_NaCas0, i_pCas0); Vmt: pasek_simurda_christe_2006__Vmt(Vmt0, Cmt, i_circ0, time_, i_Nat0, i_Cat0, i_Ktot0, i_Kstt0, i_Kft0, i_K1t0, i_Nabt0, i_Cabt0, i_Kbt0, i_NaKt0, i_NaCat0, i_pCat0); end