//Created by libAntimony v2.4 model nelson_2000__environment(time_) // Variable initializations: time_ = ; end model nelson_2000__model_parameters(lambda, delta_1, delta, np, c, k, N) // Variable initializations: lambda = 5.0; delta_1 = 0.03; delta = 0.5; np = 1.0; c = 3; k = 3.43e-5; N = 480; end model nelson_2000__uninfected_T_cells(T, lambda, delta, delta_1, time_, VI, k) // Rate Rules: T' = (lambda * 1 - (delta_1 * T) / 1) - k * VI * T; // Variable initializations: T = 180.0; lambda = ; delta = ; delta_1 = ; time_ = ; VI = ; k = ; end model nelson_2000__infected_T_cells(T_star, delta, time_, VI, k, T) // Rate Rules: T_star' = k * VI * T - (delta / 1) * T_star; // Variable initializations: T_star = 3.6; delta = ; time_ = ; VI = ; k = ; T = ; end model nelson_2000__infectious_virus(VI, delta, time_, N, np, c, T_star) // Assignment Rules: log_VI := log(VI / 1); // Rate Rules: VI' = ((1 - np) * N * delta * T_star) / 1 - (c * VI) / 1; // Variable initializations: VI = 134e3; delta = ; time_ = ; N = ; np = ; c = ; T_star = ; end model nelson_2000__non_infectious_virus(VNI, delta, time_, N, np, c, T_star) // Rate Rules: VNI' = (np * N * delta * T_star) / 1 - (c * VNI) / 1; // Variable initializations: VNI = 0; delta = ; time_ = ; N = ; np = ; c = ; T_star = ; end model nelson_2000__total_virus(VNI, VI) // Assignment Rules: virus_total := VI + VNI; log_virus_total := log(virus_total / 1); // Variable initializations: VNI = ; VI = ; end model *nelson_2000____main() // Sub-modules, and any changes to those submodules: environment: nelson_2000__environment(time_); model_parameters: nelson_2000__model_parameters(lambda, delta_1, delta, np, c, k, N); uninfected_T_cells: nelson_2000__uninfected_T_cells(T, lambda, delta, delta_1, time_, VI, k); infected_T_cells: nelson_2000__infected_T_cells(T_star, delta, time_, VI, k, T); infectious_virus: nelson_2000__infectious_virus(VI, delta, time_, N, np, c, T_star); non_infectious_virus: nelson_2000__non_infectious_virus(VNI, delta, time_, N, np, c, T_star); total_virus: nelson_2000__total_virus(VNI, VI); end