//Created by libAntimony v2.4 model mlcek_neumann_kittnar_novak_2001_version01__environment(time_) // Variable initializations: time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__A(A, kTA, kTA_, kDPA, kDPA_, kan, kab, M_ATP, A_M_ATP, M_ADP_Pi, A_M_ADP_Pi, Cai, TnC, u, time_) // Rate Rules: A' = (kTA_ * A_M_ATP + kDPA_ * A_M_ADP_Pi + u * kan * Cai * TnC) - (kTA * A * M_ATP + kDPA * A * M_ADP_Pi + kab * A); // Variable initializations: A = ; kTA = ; kTA_ = ; kDPA = ; kDPA_ = ; kan = ; kab = ; M_ATP = ; A_M_ATP = ; M_ADP_Pi = ; A_M_ADP_Pi = ; Cai = ; TnC = ; u = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__M_ADP_Pi(M_ADP_Pi, kH, kH_, kDPA, kDPA_, kan, kab, M_ATP, A, A_M_ADP_Pi, Cai, TnC, u, w1, time_) // Rate Rules: M_ADP_Pi' = (kH * M_ATP + kDPA_ * A_M_ADP_Pi + w1 * u * kan * Cai * TnC) - (kH_ * M_ADP_Pi + kDPA * A * M_ADP_Pi + kab * M_ADP_Pi); // Variable initializations: M_ADP_Pi = ; kH = ; kH_ = ; kDPA = ; kDPA_ = ; kan = ; kab = ; M_ATP = ; A = ; A_M_ADP_Pi = ; Cai = ; TnC = ; u = ; w1 = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__A_M_ADP_Pi(A_M_ADP_Pi, kAH, kAH_, kDPA, kDPA_, kDAP_, A, M_ADP_Pi, A_M_ATP, time_) // Rate Rules: A_M_ADP_Pi' = (kAH * A_M_ATP + kDPA_ * A * M_ADP_Pi) - (kDPA_ * A_M_ADP_Pi + kDAP_ * A_M_ADP_Pi + kAH_ * A_M_ADP_Pi); // Variable initializations: A_M_ADP_Pi = ; kAH = ; kAH_ = ; kDPA = ; kDPA_ = ; kDAP_ = ; A = ; M_ADP_Pi = ; A_M_ATP = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__AM_ADP(AM_ADP, kAD_, kDAP_, A_M_ADP_Pi, time_) // Rate Rules: AM_ADP' = kDAP_ * A_M_ADP_Pi - kAD_ * AM_ADP; // Variable initializations: AM_ADP = ; kAD_ = ; kDAP_ = ; A_M_ADP_Pi = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__AM(AM, kAT, kAT_, kAD_, ATP, A_M_ATP, AM_ADP, time_) // Rate Rules: AM' = (kAT_ * A_M_ATP + kAD_ * AM_ADP) - kAT_ * AM * ATP; // Variable initializations: AM = ; kAT = ; kAT_ = ; kAD_ = ; ATP = ; A_M_ATP = ; AM_ADP = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__ATP(ATP, kAT, kAT_, AM, A_M_ATP, time_) // Rate Rules: ATP' = kAT_ * A_M_ATP - kAT * AM * ATP; // Variable initializations: ATP = ; kAT = ; kAT_ = ; AM = ; A_M_ATP = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__A_M_ATP(A_M_ATP, kTA, kTA_, kAT, kAT_, kAH, kAH_, M_ATP, A, A_M_ADP_Pi, AM, ATP, time_) // Rate Rules: A_M_ATP' = (kTA * A * M_ATP + kAT * AM * ATP + kAH_ * A_M_ADP_Pi) - (kTA_ * A_M_ATP + kAT_ * A_M_ATP + kAH * A_M_ATP); // Variable initializations: A_M_ATP = ; kTA = ; kTA_ = ; kAT = ; kAT_ = ; kAH = ; kAH_ = ; M_ATP = ; A = ; A_M_ADP_Pi = ; AM = ; ATP = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__M_ATP(M_ATP, kH, kH_, kTA, kTA_, kan, kab, M_ADP_Pi, A, A_M_ATP, Cai, TnC, u, w6, time_) // Rate Rules: M_ATP' = (kH_ * M_ADP_Pi + kTA_ * A_M_ATP + w6 * u * kan * Cai * TnC) - (kH * M_ATP + kTA * A * M_ATP + kab * M_ATP); // Variable initializations: M_ATP = ; kH = ; kH_ = ; kTA = ; kTA_ = ; kan = ; kab = ; M_ADP_Pi = ; A = ; A_M_ATP = ; Cai = ; TnC = ; u = ; w6 = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__TnC(TnC, kan, kab, A, Cai, u, time_) // Rate Rules: TnC' = (1.0 / u) * kab * A - kan * Cai * TnC; // Variable initializations: TnC = ; kan = ; kab = ; A = ; Cai = ; u = ; time_ = ; end model mlcek_neumann_kittnar_novak_2001_version01__Cai(Cai, kr, kan, kab, A, CaF, TnC, u, time_) // Rate Rules: Cai' = ((1.0 / u) * kab * A + d(CaF)/ d(unknown- element)) - (kan * Cai * TnC + kr * Cai); // Variable initializations: Cai = ; kr = ; kan = ; kab = ; A = ; CaF = ; TnC = ; u = ; time_ = ; d = ; unknown = ; element = ; end model mlcek_neumann_kittnar_novak_2001_version01__CaF(CaF) // Variable initializations: CaF = ; end model mlcek_neumann_kittnar_novak_2001_version01__constants(kTA, kTA_, kDPA, kDPA_, kan, kab, kAD_, kAT, kAT_, kAH, kAH_, kH, kH_, kDAP_, kr, u, w1, w6) // Variable initializations: kTA = ; kTA_ = ; kDPA = ; kDPA_ = ; kan = ; kab = ; kAD_ = ; kAT = ; kAT_ = ; kAH = ; kAH_ = ; kH = ; kH_ = ; kDAP_ = ; kr = ; u = ; w1 = ; w6 = ; end model *mlcek_neumann_kittnar_novak_2001_version01____main() // Sub-modules, and any changes to those submodules: environment: mlcek_neumann_kittnar_novak_2001_version01__environment(time_); A: mlcek_neumann_kittnar_novak_2001_version01__A(A0, kTA, kTA_, kDPA, kDPA_, kan, kab, M_ATP0, A_M_ATP0, M_ADP_Pi0, A_M_ADP_Pi0, Cai0, TnC0, u, time_); M_ADP_Pi: mlcek_neumann_kittnar_novak_2001_version01__M_ADP_Pi(M_ADP_Pi0, kH, kH_, kDPA, kDPA_, kan, kab, M_ATP0, A0, A_M_ADP_Pi0, Cai0, TnC0, u, w1, time_); A_M_ADP_Pi: mlcek_neumann_kittnar_novak_2001_version01__A_M_ADP_Pi(A_M_ADP_Pi0, kAH, kAH_, kDPA, kDPA_, kDAP_, A0, M_ADP_Pi0, A_M_ATP0, time_); AM_ADP: mlcek_neumann_kittnar_novak_2001_version01__AM_ADP(AM_ADP0, kAD_, kDAP_, A_M_ADP_Pi0, time_); AM: mlcek_neumann_kittnar_novak_2001_version01__AM(AM0, kAT, kAT_, kAD_, ATP0, A_M_ATP0, AM_ADP0, time_); ATP: mlcek_neumann_kittnar_novak_2001_version01__ATP(ATP0, kAT, kAT_, AM0, A_M_ATP0, time_); A_M_ATP: mlcek_neumann_kittnar_novak_2001_version01__A_M_ATP(A_M_ATP0, kTA, kTA_, kAT, kAT_, kAH, kAH_, M_ATP0, A0, A_M_ADP_Pi0, AM0, ATP0, time_); M_ATP: mlcek_neumann_kittnar_novak_2001_version01__M_ATP(M_ATP0, kH, kH_, kTA, kTA_, kan, kab, M_ADP_Pi0, A0, A_M_ATP0, Cai0, TnC0, u, w6, time_); TnC: mlcek_neumann_kittnar_novak_2001_version01__TnC(TnC0, kan, kab, A0, Cai0, u, time_); Cai: mlcek_neumann_kittnar_novak_2001_version01__Cai(Cai0, kr, kan, kab, A0, CaF0, TnC0, u, time_); CaF: mlcek_neumann_kittnar_novak_2001_version01__CaF(CaF0); constants: mlcek_neumann_kittnar_novak_2001_version01__constants(kTA, kTA_, kDPA, kDPA_, kan, kab, kAD_, kAT, kAT_, kAH, kAH_, kH, kH_, kDAP_, kr, u, w1, w6); end