//Created by libAntimony v2.4 model karagiannis_model_2004__environment(time_) // Variable initializations: time_ = ; end model karagiannis_model_2004__main(time_, kshed_eff, kon_MT1T2, ki_MT1T2, kon_MT1T2M2P, koff_MT1T2M2P, kact_eff_m2, kon_M2T2, ki_M2T2, kiso_M2T2, k_iso_M2T2, kon_M2C1, koff_M2C1, kcat_M2C1, kcat_MT1C1, km_MT1C1) // Assignment Rules: v1 := kshed_eff * MT1 * MT1; v2 := kon_MT1T2 * MT1 * T2 - ki_MT1T2 * kon_MT1T2 * MT1T2; v3 := kon_MT1T2M2P * MT1T2 * M2P - koff_MT1T2M2P * MT1T2M2P; v4 := kact_eff_m2 * MT1 * MT1T2M2P; v5 := kon_M2T2 * M2 * T2 - kon_M2T2 * ki_M2T2 * M2T2; v6 := kiso_M2T2 * M2T2 - k_iso_M2T2 * M2T2star; v7 := kon_M2C1 * M2 * C1 - koff_M2C1 * M2C1; v8 := kcat_M2C1 * M2C1; v9 := (kcat_MT1C1 / km_MT1C1) * MT1 * C1; // Rate Rules: MT1' = - v1 - v2; MT1cat' = v1; MT1T2' = v2 - v3; MT1T2M2P' = v3 - v4; M2P' = - v3; M2' = (v4 - v5) - v7; M2T2' = v5 - v6; M2T2star' = v6; M2C1' = v7 - v8; C1' = - v7 - v9; C1dmt1' = v9; C1dm2' = v8; T2' = - v2 - v5; // Variable initializations: time_ = ; MT1 = 100e-9; MT1cat = 0; MT1T2 = 0; MT1T2M2P = 0; M2P = 50e-9; M2 = 0; M2T2 = 0; M2T2star = 0; M2C1 = 0; C1 = 1e-6; C1dmt1 = 0; C1dm2 = 0; T2 = 50e-9; kshed_eff = ; kon_MT1T2 = ; ki_MT1T2 = ; kon_MT1T2M2P = ; koff_MT1T2M2P = ; kact_eff_m2 = ; kon_M2T2 = ; ki_M2T2 = ; kiso_M2T2 = ; k_iso_M2T2 = ; kon_M2C1 = ; koff_M2C1 = ; kcat_M2C1 = ; kcat_MT1C1 = ; km_MT1C1 = ; end model karagiannis_model_2004__model_parameters(kshed_eff, kon_MT1T2, ki_MT1T2, kon_MT1T2M2P, koff_MT1T2M2P, kact_eff_m2, kon_M2T2, ki_M2T2, kiso_M2T2, k_iso_M2T2, kon_M2C1, koff_M2C1, kcat_M2C1, kcat_MT1C1, km_MT1C1) // Variable initializations: kshed_eff = 2.8e3; kon_MT1T2 = 3.54e6; ki_MT1T2 = 4.9e-9; kon_MT1T2M2P = 0.14e6; koff_MT1T2M2P = 4.7e-3; kact_eff_m2 = 2.8e3; kon_M2T2 = 5.9e6; ki_M2T2 = 1.07e-6; kiso_M2T2 = 33; k_iso_M2T2 = 2e-8; kon_M2C1 = 2.6e3; koff_M2C1 = 2.1e-3; kcat_M2C1 = 4.5e-3; kcat_MT1C1 = 1.97e-3; km_MT1C1 = 2.9e-6; end model *karagiannis_model_2004____main() // Sub-modules, and any changes to those submodules: environment: karagiannis_model_2004__environment(time_); main: karagiannis_model_2004__main(time_, kshed_eff, kon_MT1T2, ki_MT1T2, kon_MT1T2M2P, koff_MT1T2M2P, kact_eff_m2, kon_M2T2, ki_M2T2, kiso_M2T2, k_iso_M2T2, kon_M2C1, koff_M2C1, kcat_M2C1, kcat_MT1C1, km_MT1C1); model_parameters: karagiannis_model_2004__model_parameters(kshed_eff, kon_MT1T2, ki_MT1T2, kon_MT1T2M2P, koff_MT1T2M2P, kact_eff_m2, kon_M2T2, ki_M2T2, kiso_M2T2, k_iso_M2T2, kon_M2C1, koff_M2C1, kcat_M2C1, kcat_MT1C1, km_MT1C1); end