//Created by libAntimony v2.4 model bi_model_1999_version01__environment(t) // Variable initializations: t = ; end model bi_model_1999_version01__RAF(t, PKC, MAPK_star, GTPRasRaf_star) // Rate Rules: Raf' = (- PKC * Raf * Vmax1) / (km1 + Raf) + (Raf_star * PP2A * Vmax3) / (km3 + Raf_star); Raf_star' = (((PKC * Raf * Vmax1) / (km1 + Raf) - (Raf_star * PP2A * Vmax3) / (km3 + Raf_star)) - (Raf_star * MAPK_star * Vmax2) / (km2 + Raf_star)) + (Raf_star_star * PP2A * Vmax4) / (km4 + Raf_star_star); Raf_star_star' = (Raf_star * MAPK_star * Vmax2) / (km2 + Raf_star) - (Raf_star_star * PP2A * Vmax4) / (km4 + Raf_star_star); GTPRas' = - GTPRas * Raf_star * kf5 + GTPRasRaf_star * kb5; GTPRasRaf_star' = GTPRas * Raf_star * kf5 - GTPRasRaf_star * kb5; // Variable initializations: t = ; kf5 = 0.00004; kb5 = 0.5; km1 = 66.666666667; km2 = 25.64166667; km3 = 15.6565; km4 = 15.6565; Vmax1 = 4; Vmax2 = 10; Vmax3 = 6; Vmax4 = 6; PKC = ; PP2A = 0.224; MAPK_star = ; Raf = 0.1; Raf_star = 0; Raf_star_star = 0; GTPRas = 0.1; GTPRasRaf_star = 0; end model bi_model_1999_version01__MAPKK(t, GTPRasRaf_star, MAPKK_star_star) // Rate Rules: MAPKK' = (- MAPKK * Vmax6 * GTPRasRaf_star) / (km6 + MAPKK) + (MAPKK_star * Vmax8 * PP2A) / (km8 + MAPKK_star); MAPKK_star' = (((MAPKK * Vmax6 * GTPRasRaf_star) / (km6 + MAPKK) - (MAPKK_star * Vmax8 * PP2A) / (km8 + MAPKK_star)) - (MAPKK_star * Vmax7 * GTPRasRaf_star) / (km7 + MAPKK_star)) + (MAPKK_star_star * Vmax9 * PP2A) / (km9 + MAPKK_star_star); MAPKK_star_star' = (MAPKK_star * Vmax7 * GTPRasRaf_star) / (km7 + MAPKK_star) - (MAPKK_star_star * Vmax9 * PP2A) / (km9 + MAPKK_star_star); // Variable initializations: t = ; km6 = 0.159091667; km7 = 0.159091667; km8 = 15.6565; km9 = 15.6565; Vmax6 = 0.105; Vmax7 = 0.105; Vmax8 = 6; Vmax9 = 6; PP2A = 0.224; GTPRasRaf_star = ; MAPKK = 0.18; MAPKK_star = 0; MAPKK_star_star = 0; end model bi_model_1999_version01__MAPK(t, MAPKK_star_star, MAPK_star) // Rate Rules: MAPK' = (- MAPK * Vmax10 * MAPKK_star_star) / (km10 + MAPK) + (MAPK_tyr * Vmax12 * MKP1) / (km12 + MAPK_tyr); MAPK_tyr' = (((MAPK * Vmax10 * MAPKK_star_star) / (km10 + MAPK) - (MAPK_tyr * Vmax12 * MKP1) / (km12 + MAPK_tyr)) - (MAPK_tyr * Vmax11 * MAPKK_star_star) / (km11 + MAPK_tyr)) + (MAPK_star * Vmax13 * MKP1) / (km13 + MAPK_star); MAPK_star' = (MAPK_tyr * Vmax11 * MAPKK_star_star) / (km11 + MAPK_tyr) - (MAPK_star * Vmax13 * MKP1) / (km13 + MAPK_star); // Variable initializations: t = ; km10 = 0.046296667; km11 = 0.046296667; km12 = 0.066666667; km13 = 0.066666667; Vmax10 = 0.15; Vmax11 = 0.15; Vmax12 = 1; Vmax13 = 1; MAPKK_star_star = ; MAPK = 0.36; MAPK_tyr = 0; MAPK_star = 0; MKP1 = 0.032; end model bi_model_1999_version01__undefinedvariables(t, PKC) // Variable initializations: t = ; PKC = 0.1; end model *bi_model_1999_version01____main() // Sub-modules, and any changes to those submodules: environment: bi_model_1999_version01__environment(t); RAF: bi_model_1999_version01__RAF(t, PKC, MAPK_star, GTPRasRaf_star); MAPKK: bi_model_1999_version01__MAPKK(t, GTPRasRaf_star, MAPKK_star_star); MAPK: bi_model_1999_version01__MAPK(t, MAPKK_star_star, MAPK_star); undefinedvariables: bi_model_1999_version01__undefinedvariables(t, PKC); end