//Created by libAntimony v2.4 model bi_model_1999_version01__environment(t) // Variable initializations: t = ; end model bi_model_1999_version01__Calcium(Ca) // Variable initializations: Ca = 1; end model bi_model_1999_version01__undefinedvariables(GTP, PKA) // Variable initializations: GTP = 0.5; PKA = 0.1; end model bi_model_1999_version01__DGBM_Model_Modules(t, PKA, Ca, GTP, PKC, GAP, Raf, GEF_star, CaM_GEF, Gbg_GEF, CaGqPLC, CaPLC, NgCaM, GEF, Ng) // Rate Rules: GEF_star' = (PKC * VmaxB6 * GEF) / (kmB6 * (one + GAP / kmB3 + Ng / kmM7 + Raf / kmH1 + NgCaM / kmM8) + GEF) - kfB7 * GEF_star; CaM_GEF' = - kbB5 * CaM_GEF + kfB5 * GEF * Ca4CAM; Gbg_GEF' = -(- kfB8 * GEF * Gbg + kbB8 * Gbg_GEF); CaGqPLC' = (((GqPLC * Ca * kfG3 - CaGqPLC * kbG3) + CaPLC * Ga_GTP * kfG4) - CaGqPLC * kbG4) - CaGqPLC * kfG5; CaPLC' = ((PLC * Ca * kfG1 - CaPLC * kbG1) + CaGqPLC * kfG5) - (- CaGqPLC * kbG4 + CaPLC * Ga_GTP * kfG4); NgCaM' = (kfM4 * Ng * CaM - kbM4 * NgCaM) - (NgCaM * PKC * VmaxM8) / (NgCaM + kmM8 * (one + GAP / kmB3 + GEF / kmB6 + Raf / kmH1 + Ng / kmM7)); GEF' = (((-((((PKA * VmaxB1 * GEF) / (kmB1 + GEF) + (PKC * VmaxB6 * GEF) / (kmB6 * (one + GAP / kmB3 + Ng / kmM7 + Raf / kmH1 + NgCaM / kmM8) + GEF)) - kfB2 * GEF_inact) - kfB7 * GEF_star) - kfB5 * Ca4CAM * GEF) + kbB5 * CaM_GEF) - kfB8 * GEF * Gbg) + kbB8 * Gbg_GEF; Ng' = (kfM6 * Ng_star + (VmaxM5 * Ng_star) / (Ng_star + kmM5)) - (Ng * PKC * VmaxM7) / (Ng + kmM7 * (one + GAP / kmB3 + GEF / kmB6 + Raf / kmH1 + NgCaM / kmM8)); Gbg' = (- Ga_GDP * Gbg * kfD8 + kfD6 * Gabg_GluR + kfD9 * Gabg * GTP) - (kfB8 * GEF * Gbg - kbB8 * Gbg_GEF); Ga_GDP' = (Ga_GTP * kfD7 - Ga_GDP * kfD8 * Gbg) + CaGqPLC * kfG5; mGluR' = ((kfD5 * Gabg_GluR - kbD5 * Gabg * mGluR) - (kfD3 * mGluR - kbD3 * Glu * R)) + kfD6 * Gabg_GluR; PLC' = -(PLC * Ca * kfG1 - CaPLC * kbG1) - (PLC * Ga_GTP * kfG2 - GqPLC * kbG2); Ca2CaM' = (kfM1 * Ca * Ca * CaM - kbM1 * Ca2CaM) - (Ca * Ca2CaM * kfM2 - kbM2 * Ca3CaM); Ca3CaM' = (Ca * Ca2CaM * kfM2 - kbM2 * Ca3CaM) - (Ca * Ca3CaM * kfM3 - kbM3 * Ca4CAM); Ng_star' = (((NgCaM * PKC * VmaxM8) / (NgCaM + kmM8 * (one + GAP / kmB3 + GEF / kmB6 + Raf / kmH1 + Ng / kmM7)) - kfM6 * Ng_star) - (VmaxM5 * Ng_star) / (Ng_star + kmM5)) + (Ng * PKC * VmaxM7) / (Ng + kmM7 * (one + GAP / kmB3 + GEF / kmB6 + Raf / kmH1 + NgCaM / kmM8)); Gabg' = (((Ga_GDP * Gbg * kfD8 - (Gabg * R * kfD4 - Gabg_R * kbD4)) + kfD5 * Gabg_GluR) - kbD5 * Gabg * mGluR) - kfD9 * Gabg * GTP; R' = (kfD3 * mGluR - kbD3 * Glu * R) - (Gabg * R * kfD4 - Gabg_R * kbD4); Gabg_R' = ((Gabg * R * kfD4 - Gabg_R * kbD4) + kfD2 * Gabg_GluR) - Gabg_R * Glu * kbD2; Glu_synapse' = -(kfD1 * Glu_synapse - kbD1 * Glu); Gabg_GluR' = (-(kfD2 * Gabg_GluR - Gabg_R * Glu * kbD2) - (kfD5 * Gabg_GluR - kbD5 * Gabg * mGluR)) - kfD6 * Gabg_GluR; Glu' = ((((kfD1 * Glu_synapse - kbD1 * Glu) + kfD2 * Gabg_GluR) - Gabg_R * Glu * kbD2) + kfD3 * mGluR) - kbD3 * Glu * R; Ga_GTP' = ((kfD9 * Gabg * GTP - Ga_GTP * kfD7) - (PLC * Ga_GTP * kfG2 - GqPLC * kbG2)) - (CaGqPLC * kbG4 + CaPLC * Ga_GTP * kfG4); GqPLC' = (PLC * Ga_GTP * kfG2 - GqPLC * kbG2) - (Ca * GqPLC * kfG3 - CaGqPLC * kbG3); GEF_inact' = (PKA * VmaxB1 * GEF) / (kmB1 + GEF) - kfB2 * GEF_inact; Ca4CAM' = (-(- kbB5 * CaM_GEF + kfB5 * GEF * Ca4CAM) + Ca * Ca3CaM * kfM3) - kbM3 * Ca4CAM; CaM' = (-(kfM1 * Ca * Ca * CaM - kbM1 * Ca2CaM) - (kfM4 * Ng * CaM - kbM4 * NgCaM)) + (NgCaM * PKC * VmaxM8) / (NgCaM + kmM8); // Variable initializations: t = ; PKA = ; Ca = ; GTP = ; PKC = ; GAP = ; Raf = ; GEF_star = 0; CaM_GEF = 0; Gbg_GEF = 0; CaGqPLC = 0; CaPLC = 0; NgCaM = 0; GEF = 0; Ng = 10; Gbg = 0.1; Ga_GDP = 1; mGluR = 0.3; PLC = 0.8; Ca2CaM = 0; Ca3CaM = 0; Ng_star = 0; Gabg = 0; R = 0; Gabg_R = 0; Glu_synapse = 0; Gabg_GluR = 0; Glu = 0; Ga_GTP = 0; GqPLC = 0; GEF_inact = 0.1; Ca4CAM = 0; CaM = 20; one = 1; kfD1 = 500; kbD1 = 1000; kfD2 = 0.000028; kbD2 = 0.1; kfD3 = 0.000028; kbD3 = 10; kfD4 = 0.000001; kbD4 = 1; kfD5 = 0.00000001; kbD5 = 0.0001; kfD6 = 0.01; kfD7 = 0.0133; kfD8 = 0.00001; kfD9 = 0.0001; kfG1 = 0.000005; kbG1 = 1; kfG2 = 0.0000042; kbG2 = 1; kfG3 = 0.00005; kbG3 = 1; kfG4 = 0.0000042; kbG4 = 1; kfG5 = 0.0133; kfB2 = 1; kbB2 = 0; kmB3 = 3.333333333333; kfB5 = 0.0001; kbB5 = 1; kfB7 = 1; kbB7 = 0; kfB8 = 0.00001; kbB8 = 1; kmB1 = 7.5; VmaxB1 = 9; kmB6 = 3.33333333333; VmaxB6 = 4; kfM1 = 0.0000000002; kbM1 = 72; kfM2 = 0.000006; kbM2 = 10; kfM3 = 0.000000775; kbM3 = 10; kfM4 = 0.0000005; kbM4 = 1; kfM6 = 0.005; kmM5 = 10.012; VmaxM5 = 0.67; kmM7 = 28.626667; VmaxM7 = 0.58; kmM8 = 28.595; VmaxM8 = 0.35; kmH1 = 66.666666667; end model bi_model_1999_version01__B_Model_Modules(t, GEF_star, Gbg_GEF, CaM_GEF, PKC, SHCstar_SOS_GRB2, MAPK_star, NgCaM, GEF, Ng, SOS, MAPKK_star_star, MAPKK_star, Raf_star, GAP, Raf, GTPRasRaf_star, Raf_star_star) // Rate Rules: Raf_star' = (((PKC * Raf * VmaxH1) / (kmH1 * (one + GAP / kmB3 + GEF / kmB6 + Ng / kmM7 + NgCaM / kmM8) + Raf) - (Raf_star * PP2A * VmaxH3) / (kmH3 * (one + Raf_star_star / kmH4 + MAPKK_star_star / kmH9 + MAPKK_star / kmH8) + Raf_star)) - (Raf_star * MAPK_star * VmaxH2) / (kmH2 * (one + SOS / kmA9) + Raf_star)) + (Raf_star_star * PP2A * VmaxH4) / (kmH4 * (one + Raf_star / kmH3 + MAPKK_star_star / kmH9 + MAPKK_star / kmH8) + Raf_star_star); GAP' = (- PKC * VmaxB3 * GAP) / (kmB3 * (one + Raf / kmH1 + GEF / kmB6 + Ng / kmM7 + NgCaM / kmM8) + GAP) + kfB4 * GAPstar; Raf' = (- PKC * Raf * VmaxH1) / (kmH1 * (one + GAP / kmB3 + GEF / kmB6 + Ng / kmM7 + NgCaM / kmM8) + Raf) + (Raf_star * PP2A * VmaxH3) / (kmH3 * (one + Raf_star_star / kmH4 + MAPKK_star_star / kmH9 + MAPKK_star / kmH8) + Raf_star); GTPRasRaf_star' = GTP_RAS * Raf_star * kfH5 - GTPRasRaf_star * kbH5; Raf_star_star' = (Raf_star * MAPK_star * VmaxH2) / (kmH2 * (one + SOS / kmA9) + Raf_star) - (Raf_star_star * PP2A * VmaxH4) / (kmH4 * (one + Raf_star / kmH3 + MAPKK_star_star / kmH9 + MAPKK_star / kmH8) + Raf_star_star); GTP_RAS' = ((((- GAP * VmaxB13 * GTP_RAS) / (kmB13 + GTP_RAS) - kfB12 * GTP_RAS) + (GEF_star * VmaxB10 * GDP_RAS) / (kmB10 + GDP_RAS) + (Gbg_GEF * VmaxB11 * GDP_RAS) / (kmB11 + GDP_RAS) + (CaM_GEF * VmaxB9 * GDP_RAS) / (kmB9 + GDP_RAS) + (SHCstar_SOS_GRB2 * VmaxA7 * GDP_RAS) / (kmA7 + GDP_RAS)) - GTP_RAS * Raf_star * kfH5) + GTPRasRaf_star * kbH5; GDP_RAS' = -(((- GAP * VmaxB13 * GTP_RAS) / (kmB13 + GTP_RAS) - kfB12 * GTP_RAS) + (GEF_star * VmaxB10 * GDP_RAS) / (kmB10 + GDP_RAS) + (Gbg_GEF * VmaxB11 * GDP_RAS) / (kmB11 + GDP_RAS) + (CaM_GEF * VmaxB9 * GDP_RAS) / (kmB9 + GDP_RAS)) - (SHCstar_SOS_GRB2 * VmaxA7 * GDP_RAS) / (kmA7 + GDP_RAS); GAPstar' = (PKC * VmaxB3 * GAP) / (kmB3 * (one + Raf / kmH1 + GEF / kmB6 + Ng / kmM7 + NgCaM / kmM8) + GAP) - kfB4 * GAPstar; // Variable initializations: t = ; GEF_star = ; Gbg_GEF = ; CaM_GEF = ; PKC = ; SHCstar_SOS_GRB2 = ; MAPK_star = ; NgCaM = ; GEF = ; Ng = ; SOS = ; MAPKK_star_star = ; MAPKK_star = ; Raf_star = 0; GAP = 0.002; Raf = 0.2; GTPRasRaf_star = 0; Raf_star_star = 0; GTP_RAS = 0; GDP_RAS = 0.2; GAPstar = 0; PP2A = 0.224; one = 1; kfB12 = 0.0001; kbB12 = 0; kmB9 = 0.50505; VmaxB9 = 0.02; kmB10 = 0.50505; VmaxB10 = 0.02; kmB11 = 0.50505; VmaxB11 = 0.02; kmB13 = 1.0104; VmaxB13 = 10; kfB4 = 0.1; kbB4 = 0; kmB3 = 3.33333333333; VmaxB3 = 4; kmA7 = 0.50505; VmaxA7 = 0.02; kfH5 = 0.00004; kbH5 = 0.5; kmH1 = 66.666666667; kmH2 = 25.64166667; kmH3 = 15.6565; kmH4 = 15.6565; VmaxH1 = 4; VmaxH2 = 10; VmaxH3 = 6; VmaxH4 = 6; kmM8 = 28.595; kmB6 = 3.33333333333; kmM7 = 28.626667; kmA9 = 2.564166667; kmH8 = 15.6565; kmH9 = 15.6565; end model bi_model_1999_version01__H_Model_Module_MAPKK(t, GTPRasRaf_star, Raf_star, Raf_star_star, MAPKK_star, MAPKK_star_star) // Rate Rules: MAPKK_star' = (((MAPKK * VmaxH6 * GTPRasRaf_star) / (kmH6 * (one + MAPKK_star / kmH7) + MAPKK) - (MAPKK_star * VmaxH8 * PP2A) / (kmH8 * (one + Raf_star / kmH3 + Raf_star_star / kmH4 + MAPKK_star_star / kmH9) + MAPKK_star)) - (MAPKK_star * VmaxH7 * GTPRasRaf_star) / (kmH7 * (one + MAPKK / kmH6) + MAPKK_star)) + (MAPKK_star_star * VmaxH9 * PP2A) / (kmH9 * (one + Raf_star / kmH3 + Raf_star_star / kmH4 + MAPKK_star / kmH8) + MAPKK_star_star); MAPKK_star_star' = (MAPKK_star * VmaxH7 * GTPRasRaf_star) / (kmH7 * (one + MAPKK / kmH6) + MAPKK_star) - (MAPKK_star_star * VmaxH9 * PP2A) / (kmH9 * (one + Raf_star / kmH3 + Raf_star_star / kmH4 + MAPKK_star / kmH8) + MAPKK_star_star); MAPKK' = (- MAPKK * VmaxH6 * GTPRasRaf_star) / (kmH6 * (one + MAPKK_star / kmH7) + MAPKK) + (MAPKK_star * VmaxH8 * PP2A) / (kmH8 * (one + Raf_star / kmH3 + Raf_star_star / kmH4 + MAPKK_star_star / kmH9) + MAPKK_star); // Variable initializations: t = ; GTPRasRaf_star = ; Raf_star = ; Raf_star_star = ; MAPKK_star = 0; MAPKK_star_star = 0; MAPKK = 0.18; PP2A = 0.224; one = 1; kmH6 = 0.159091667; kmH7 = 0.159091667; kmH8 = 15.6565; kmH9 = 15.6565; VmaxH6 = 0.105; VmaxH7 = 0.105; VmaxH8 = 6; VmaxH9 = 6; kmH3 = 15.6565; kmH4 = 15.6565; end model bi_model_1999_version01__H_Model_Module_MAPK(t, MAPKK_star_star, MAPK_star, MAPK) // Rate Rules: MAPK_star' = (MAPK_tyr * VmaxH11 * MAPKK_star_star) / (kmH11 * (one + MAPK / kmH10) + MAPK_tyr) - (MAPK_star * VmaxH13 * MKP1) / (kmH13 * (one + MAPK_tyr / kmH12) + MAPK_star); MAPK' = (- MAPK * VmaxH10 * MAPKK_star_star) / (kmH10 * (one + MAPK_tyr / kmH11) + MAPK) + (MAPK_tyr * VmaxH12 * MKP1) / (kmH12 * (one + MAPK_star / kmH13) + MAPK_tyr); MAPK_tyr' = (((MAPK * VmaxH10 * MAPKK_star_star) / ((kmH10 * MAPK_tyr) / kmH11 + MAPK) - (MAPK_tyr * VmaxH12 * MKP1) / (kmH12 * (one + MAPK_star / kmH13) + MAPK_tyr)) - (MAPK_tyr * VmaxH11 * MAPKK_star_star) / (kmH11 * (one + MAPK_tyr / kmH12) + MAPK_tyr)) + (MAPK_star * VmaxH13 * MKP1) / (kmH13 * (one + MAPK_tyr / kmH12) + MAPK_star); // Variable initializations: t = ; MAPKK_star_star = ; MAPK_star = 0; MAPK = 0.36; MAPK_tyr = 0; MKP1 = 0.032; one = 1; kmH10 = 0.046296667; kmH11 = 0.046296667; kmH12 = 0.066666667; kmH13 = 0.066666667; VmaxH10 = 0.15; VmaxH11 = 0.15; VmaxH12 = 1; VmaxH13 = 1; end model bi_model_1999_version01__A_Model_Module_SHC(t, EGF_EGFR, MAPK_star, Raf_star, CaPLCg, SOS, SHCstar_SOS_GRB2, SHC) // Rate Rules: SOS' = (((kfA8 * SOSstar - kbA8 * SOS) - (MAPK_star * VmaxA9 * SOS) / (kmA9 * (one + Raf_star / kmH2) + SOS)) + kbA5 * SOS_GRB2) - kfA5 * SOS * GRB2; SHCstar_SOS_GRB2' = kfA6 * SHCstar * SOS_GRB2 - kbA6 * SHCstar_SOS_GRB2; SHC' = (kfA4 * SHCstar - kbA4 * SHC) - (EGF_EGFR * VmaxA3 * SHC) / (kmA3 * (one + CaPLCg / kmF4) + SHC); SHCstar' = (((EGF_EGFR * VmaxA3 * SHC) / (kmA3 * (one + CaPLCg / kmF4) + SHC) - kfA6 * SHCstar * SOS_GRB2) + kbA6 * SHCstar_SOS_GRB2) - kfA4 * SHCstar; SOSstar_GRB2' = kfA10 * SOSstar * GRB2 - kbA10 * SOSstar_GRB2; SOS_GRB2' = ((- kfA6 * SHCstar * SOS_GRB2 + kbA6 * SHCstar_SOS_GRB2) - kbA5 * SOS_GRB2) + kfA5 * SOS * GRB2; GRB2' = ((kbA5 * SOS_GRB2 - kfA5 * SOS * GRB2) - kfA10 * SOSstar * GRB2) + kbA10 * SOSstar_GRB2; SOSstar' = ((- kfA8 * SOSstar + kbA8 * SOS + (MAPK_star * VmaxA9 * SOS) / (kmA9 * (one + Raf_star / kmH2) + SOS)) - kfA10 * SOSstar * GRB2) + kbA10 * SOSstar_GRB2; // Variable initializations: t = ; EGF_EGFR = ; MAPK_star = ; Raf_star = ; CaPLCg = ; SOS = 0.1; SHCstar_SOS_GRB2 = 0; SHC = 0.5; SHCstar = 0; SOSstar_GRB2 = 0; SOS_GRB2 = 0; GRB2 = 1; SOSstar = 0; one = 1; kmA3 = 0.83333333333; kfA4 = 0.0016667; kbA4 = 0; kfA5 = 0.000000041667; kbA5 = 0.0168; kfA6 = 0.0000008333; kbA6 = 0.1; kfA8 = 0.001; kbA8 = 0; kfA10 = 0.000000041667; kbA10 = 0.0168; kmA7 = 0.40404; kmA9 = 2.564166667; VmaxA7 = 0.02; VmaxA3 = 0.2; VmaxA9 = 10; kmH2 = 25.64166667; kmF4 = 0.33333333333; end model bi_model_1999_version01__A_Model_Module_EGFR(t, EGF_EGFR) // Rate Rules: EGF_EGFR' = ((kfA1 * EGF * EGFR - kbA1 * EGF_EGFR) - kfA2 * EGF_EGFR) + kbA2 * EGF_EGFR_INTERNAL; EGF_EGFR_INTERNAL' = kfA2 * EGF_EGFR - kbA2 * EGF_EGFR_INTERNAL; EGF' = - kfA1 * EGF * EGFR + kbA1 * EGF_EGFR; EGFR' = - kfA1 * EGF * EGFR + kbA1 * EGF_EGFR; // Variable initializations: t = ; EGF_EGFR = 0; EGF_EGFR_INTERNAL = 0; EGF = 166.67; EGFR = 0.16667; kfA1 = 0.000007; kbA1 = 0.25; kfA2 = 0.002; kbA2 = 0.00033; end model bi_model_1999_version01__F_Model_Module_PLC(t, EGF_EGFR, Ca, SHC, CaPLCg, CaPLCg_star) // Rate Rules: CaPLCg' = (-(- Ca * PLCg * kfF1 + CaPLCg * kbF1) + kfF3 * CaPLCg_star) - (VmaxF4 * EGF_EGFR * CaPLCg) / (kmF4 * (one + SHC / kmA3) + CaPLCg); CaPLCg_star' = (-(kfF3 * CaPLCg_star - (VmaxF4 * EGF_EGFR * CaPLCg) / (kmF4 + CaPLCg)) + Ca * PLCg_star * kfF5) - kbF5 * CaPLCg_star; PLCg' = - Ca * PLCg * kfF1 + CaPLCg * kbF1; PLCg_star' = - Ca * PLCg_star * kfF5 + kbF5 * CaPLCg_star; // Variable initializations: t = ; EGF_EGFR = ; Ca = ; SHC = ; CaPLCg = 0; CaPLCg_star = 0; PLCg = 0.82; PLCg_star = 0; kfF1 = 0.0003; kbF1 = 10; kfF3 = 0.05; kfF5 = 0.00002; kbF5 = 10; kmF4 = 0.33333333333; VmaxF4 = 0.2; kmA3 = 0.83333333333; one = 1; end model bi_model_1999_version01__KEL_DAGIP3_Model_Modules(t, Ca, MAPK, CaPLCg, CaPLCg_star, CaPLC, CaGqPLC, PKC) // Rate Rules: PKC' = ((((((((((PKC_i * kfK1 - PKC * kbK1) + PKC_i * AA * kfK2) - PKC * kbK2) + CaPKC * kfK3) - PKC * kbK3) + CaPKC * AA * kfK4) - PKC * kbK4) + DAGCaPKC * kfK5) - PKC * kbK5) + AADAGPKC * kfK6) - PKC * kbK6; PKC_i' = ((((((- PKC_i * kfK1 + PKC * kbK1) - PKC_i * AA * kfK2) + PKC * kbK2) - PKC_i * DAG * kfK9) + DAGPKC * kbK9) - PKC_i * Ca * kfK7) + CaPKC * kbK7; DAGPKC' = ((PKC_i * DAG * kfK9 - DAGPKC * kbK9) - DAGPKC * AA * kfK10) + AADAGPKC * kbK10; AADAGPKC' = ((DAGPKC * AA * kfK10 - AADAGPKC * kbK10) - AADAGPKC * kfK6) + PKC * kbK6; DAGCaPKC' = ((DAG * CaPKC * kfK8 - DAGCaPKC * kbK8) - DAGCaPKC * kfK5) + PKC * kbK5; CaPKC' = ((((((PKC_i * Ca * kfK7 - CaPKC * kbK7) - CaPKC * kfK3) + PKC * kbK3) - CaPKC * AA * kfK4) + PKC * kbK4) - DAG * CaPKC * kfK8) + DAGCaPKC * kbK8; AA' = ((((((- PKC_i * AA * kfK2 + PKC * kbK2) - CaPKC * AA * kfK4) + PKC * kbK4) - DAGPKC * AA * kfK10) + AADAGPKC * kbK10) - AA * kfE13) + (CaPLA2_star * VmaxE12 * APC) / (kmE12 + APC) + (CaPLA2 * VmaxE4 * APC) / (kmE4 + APC) + (DAGCaPLA2 * VmaxE8 * APC) / (kmE8 + APC) + (PIP2CaPLA2 * VmaxE6 * APC) / (kmE6 + APC) + (PIP2PLA2 * VmaxE2 * APC) / (kmE2 + APC); APC' = AA * kfE13 - ((CaPLA2_star * VmaxE12 * APC) / (kmE12 + APC) + (CaPLA2 * VmaxE4 * APC) / (kmE4 + APC) + (DAGCaPLA2 * VmaxE8 * APC) / (kmE8 + APC) + (PIP2CaPLA2 * VmaxE6 * APC) / (kmE6 + APC) + (PIP2PLA2 * VmaxE2 * APC) / (kmE2 + APC)); PIP2_star' = ((- PIP2_star * PLA2_cyt * kfE1 + PIP2PLA2 * kbE1) - PIP2_star * CaPLA2 * kfE5) + PIP2CaPLA2 * kbE5; PLA2_cyt' = ((((PLA2_star * kfE10 - PIP2_star * PLA2_cyt * kfE1) + PIP2PLA2 * kbE1) - Ca * PLA2_cyt * kfE3) + CaPLA2 * kbE3) - (MAPK * VmaxE9 * PLA2_cyt) / (kmE9 + PLA2_cyt); PLA2_star' = ((- PLA2_star * kfE10 + (MAPK * VmaxE9 * PLA2_cyt) / (kmE9 + PLA2_cyt)) - Ca * PLA2_star * kfE11) + CaPLA2_star * kbE11; CaPLA2' = ((((Ca * PLA2_cyt * kfE3 - CaPLA2 * kbE3) - DAG * CaPLA2 * kfE7) + DAGCaPLA2 * kbE7) - PIP2_star * CaPLA2 * kfE5) + PIP2CaPLA2 * kbE5; PIP2CaPLA2' = PIP2_star * CaPLA2 * kfE5 - PIP2CaPLA2 * kbE5; PIP2PLA2' = PIP2_star * PLA2_cyt * kfE1 - PIP2PLA2 * kbE1; DAGCaPLA2' = DAG * CaPLA2 * kfE7 - DAGCaPLA2 * kbE7; CaPLA2_star' = Ca * PLA2_star * kfE11 - CaPLA2_star * kbE11; PIP2' = (((- CaPLCg * VmaxF2 * PIP2) / (kmF2 + PIP2) - (CaPLCg_star * VmaxF6 * PIP2) / (kmF6 + PIP2)) - (CaPLC * VmaxG7 * PIP2) / (kmG7 + PIP2)) - (CaGqPLC * VmaxG6 * PIP2) / (kmG6 + PIP2); DAG' = (((((((((CaPLCg * VmaxF2 * PIP2) / (kmF2 + PIP2) + (CaPLCg_star * VmaxF6 * PIP2) / (kmF6 + PIP2) + (CaPLC * VmaxG7 * PIP2) / (kmG7 + PIP2)) - kfG8 * DAG) + (CaGqPLC * VmaxG6 * PIP2) / (kmG6 + PIP2)) - PKC_i * DAG * kfK9) + DAGPKC * kbK9) - DAG * CaPKC * kfK8) + DAGCaPKC * kbK8) - DAG * CaPLA2 * kfE7) + DAGCaPLA2 * kbE7; IP3' = (((CaPLCg * VmaxF2 * PIP2) / (kmF2 + PIP2) + (CaPLCg_star * VmaxF6 * PIP2) / (kmF6 + PIP2) + (CaGqPLC * VmaxG6 * PIP2) / (kmG6 + PIP2)) - kfG9 * IP3) + (CaPLC * VmaxG7 * PIP2) / (kmG7 + PIP2); Inositol' = kfG9 * IP3; PC' = kfG8 * DAG; // Variable initializations: t = ; Ca = ; MAPK = ; CaPLCg = ; CaPLCg_star = ; CaPLC = ; CaGqPLC = ; PKC = 0; PKC_i = 1; DAGPKC = 0; AADAGPKC = 0; DAGCaPKC = 0; CaPKC = 0; AA = 0; APC = 30; PIP2_star = 2.5; PLA2_cyt = 0.4; PLA2_star = 0; CaPLA2 = 0; PIP2CaPLA2 = 0; PIP2PLA2 = 0; DAGCaPLA2 = 0; CaPLA2_star = 0; PIP2 = 10; DAG = 0; IP3 = 0; Inositol = 0; PC = 0; kfK1 = 1; kbK1 = 50; kfK2 = 0.0000000002; kbK2 = 0.1; kfK3 = 1.2705; kbK3 = 3.5026; kfK4 = 0.000000002; kbK4 = 0.1; kfK5 = 1; kbK5 = 0.1; kfK6 = 2; kbK6 = 0.2; kfK7 = 0.000001; kbK7 = 0.5; kfK8 = 0.000000013333; kbK8 = 8.6348; kfK9 = 0.000000001; kbK9 = 0.1; kfK10 = 0.00000003; kbK10 = 2; kfE1 = 0.000000002; kbE1 = 0.5; kfE3 = 0.00000016667; kbE3 = 0.1; kfE5 = 0.00000002; kbE5 = 0.1; kfE7 = 0.000000005; kbE7 = 4; kfE10 = 0.17; kbE10 = 0; kfE11 = 0.00001; kbE11 = 0.1; kmE9 = 25.64166667; VmaxE9 = 20; kfE13 = 0.4; kbE13 = 0; kmE2 = 20; kmE4 = 20; kmE6 = 20; kmE8 = 20; kmE12 = 20; VmaxE2 = 11.04; VmaxE4 = 5.4; VmaxE6 = 36; VmaxE8 = 60; VmaxE12 = 120; kmF2 = 97; kmF6 = 19.79166667; VmaxF2 = 14; VmaxF6 = 57; kfG8 = 0.15; kfG9 = 2.5; kmG6 = 5; VmaxG6 = 48; kmG7 = 19.84166667; VmaxG7 = 10; end model *bi_model_1999_version01____main() // Sub-modules, and any changes to those submodules: environment: bi_model_1999_version01__environment(t); Calcium: bi_model_1999_version01__Calcium(Ca); undefinedvariables: bi_model_1999_version01__undefinedvariables(GTP, PKA); DGBM_Model_Modules: bi_model_1999_version01__DGBM_Model_Modules(t, PKA, Ca, GTP, PKC, GAP, Raf, GEF_star, CaM_GEF, Gbg_GEF, CaGqPLC, CaPLC, NgCaM, GEF, Ng); B_Model_Modules: bi_model_1999_version01__B_Model_Modules(t, GEF_star, Gbg_GEF, CaM_GEF, PKC, SHCstar_SOS_GRB2, MAPK_star, NgCaM, GEF, Ng, SOS, MAPKK_star_star, MAPKK_star, Raf_star, GAP, Raf, GTPRasRaf_star, Raf_star_star); H_Model_Module_MAPKK: bi_model_1999_version01__H_Model_Module_MAPKK(t, GTPRasRaf_star, Raf_star, Raf_star_star, MAPKK_star, MAPKK_star_star); H_Model_Module_MAPK: bi_model_1999_version01__H_Model_Module_MAPK(t, MAPKK_star_star, MAPK_star, MAPK); A_Model_Module_SHC: bi_model_1999_version01__A_Model_Module_SHC(t, EGF_EGFR, MAPK_star, Raf_star, CaPLCg, SOS, SHCstar_SOS_GRB2, SHC); A_Model_Module_EGFR: bi_model_1999_version01__A_Model_Module_EGFR(t, EGF_EGFR); F_Model_Module_PLC: bi_model_1999_version01__F_Model_Module_PLC(t, EGF_EGFR, Ca, SHC, CaPLCg, CaPLCg_star); KEL_DAGIP3_Model_Modules: bi_model_1999_version01__KEL_DAGIP3_Model_Modules(t, Ca, MAPK, CaPLCg, CaPLCg_star, CaPLC, CaGqPLC, PKC); end