// Created by libAntimony v2.8.0 model *MODEL1305280001() // Compartments and Species: compartment cytoplasm, nucleus, membrane, ecm; substanceOnly species ADAMTS4_mRNA in cytoplasm, cFos in cytoplasm, cFos_mRNA in cytoplasm; substanceOnly species cJun in cytoplasm, cJun_mRNA in cytoplasm, DUSP16 in cytoplasm; substanceOnly species IRAK2 in cytoplasm, IRAK2_TRAF6 in cytoplasm, IRAK2_TRAF6_PP4 in cytoplasm; substanceOnly species JAK1 in cytoplasm, JAK1_P in cytoplasm, JNK in cytoplasm; substanceOnly species JNK_P in cytoplasm, Matriptase in cytoplasm, MKP1 in cytoplasm; substanceOnly species MMP1_mRNA in cytoplasm, MMP3_mRNA in cytoplasm, MMP13_mRNA in cytoplasm; substanceOnly species p38 in cytoplasm, p38_P in cytoplasm, PP4 in cytoplasm; substanceOnly species proMMP1 in cytoplasm, proMMP3 in cytoplasm, proMMP13 in cytoplasm; substanceOnly species PTPRT in cytoplasm, SOCS3 in cytoplasm, SOCS3_mRNA in cytoplasm; substanceOnly species STAT3_cyt in cytoplasm, STAT3_P_cyt in cytoplasm; substanceOnly species TIMP1_mRNA in cytoplasm, TIMP3_mRNA in cytoplasm; substanceOnly species TRAF6 in cytoplasm, TRAF6_PP4 in cytoplasm, ADAMTS4 in ecm; substanceOnly species ADAMTS4_TIMP1 in ecm, ADAMTS4_TIMP3 in ecm, Aggrecan in ecm; substanceOnly species Aggrecan_Collagen2 in ecm, AggFrag in ecm, ColFrag in ecm; substanceOnly species Collagen2 in ecm, IL1 in ecm, MMP1 in ecm, MMP1_TIMP1 in ecm; substanceOnly species MMP1_TIMP3 in ecm, MMP3 in ecm, MMP3_TIMP1 in ecm; substanceOnly species MMP3_TIMP3 in ecm, MMP13 in ecm, MMP13_TIMP1 in ecm; substanceOnly species MMP13_TIMP3 in ecm, OSM in ecm, TIMP1 in ecm, TIMP3 in ecm; substanceOnly species IL1_IL1R in membrane, IL1_IL1Ra in membrane, IL1_IL1R_IRAK2 in membrane; substanceOnly species IL1R in membrane, IL1Ra in membrane, OSM_OSMR in membrane; substanceOnly species OSM_OSMRa in membrane, OSMR_SOCS3 in membrane, OSMR in membrane; substanceOnly species OSMRa in membrane, cFos_cJun in nucleus, cFos_P in nucleus; substanceOnly species cJun_P in nucleus, cJun_dimer in nucleus, SP1 in nucleus; substanceOnly species SP1_TIMP1_DNA in nucleus, STAT3_nuc in nucleus, STAT3_P_nuc in nucleus; substanceOnly species TIMP1_DNA in nucleus, $Source in cytoplasm, $Sink in cytoplasm; // Reactions: IL1binding: IL1 + IL1R => IL1_IL1R; kbinIL1IL1R*IL1*IL1R; IL1release: IL1_IL1R => IL1 + IL1R; krelIL1IL1R*IL1_IL1R; IL1antagonistbinding: IL1 + IL1Ra => IL1_IL1Ra; kbinIL1IL1Ra*IL1*IL1Ra; IL1antagonistrelease: IL1_IL1Ra => IL1 + IL1Ra; krelIL1IL1Ra*IL1_IL1Ra; IL1degradation: IL1 => $Sink; kdegIL1*IL1; IRAK2binding: IL1_IL1R + IRAK2 => IL1_IL1R_IRAK2; kbinIRAK2*IL1_IL1R*IRAK2; IRAK2release: IL1_IL1R_IRAK2 => IL1_IL1R + IRAK2; krelIRAK2*IL1_IL1R_IRAK2; TRAF6binding: IL1_IL1R_IRAK2 + TRAF6 => IL1_IL1R + IRAK2_TRAF6; kbinTRAF6*IL1_IL1R_IRAK2*TRAF6; TRAF6release: IRAK2_TRAF6 => IRAK2 + TRAF6; krelTRAF6*IRAK2_TRAF6; JNKphosphorylation: JNK + IRAK2_TRAF6 => JNK_P + IRAK2_TRAF6; kphosJNK*JNK*IRAK2_TRAF6; JNKdephosphorylation: JNK_P => JNK; kdephosJNK*JNK_P; JNKdephosphorylationByDUSP16: JNK_P + DUSP16 => JNK + DUSP16; kdephosJNKDUSP16*JNK_P*DUSP16; cJunPhosphorylation: cJun + JNK_P => cJun_P + JNK_P; kphoscJun*cJun*JNK_P; cJunDephosphorylation: cJun_P => cJun; kdephoscJun*cJun_P; cJunDimerisation: 2cJun_P => cJun_dimer; kdimercJun*cJun_P*(cJun_P - 1)*0.5; cJunDedimerisation: cJun_dimer => 2cJun_P; kdedimercJun*cJun_dimer; cJunTranscriptionAP1: cFos_cJun => cJun_mRNA + cFos_cJun; ksyncJunmRNA*cFos_cJun*kAP1activity; cJunTranscriptioncJun: cJun_dimer => cJun_mRNA + cJun_dimer; ksyncJunmRNAcJun*cJun_dimer; cJunBasalTranscription: $Source => cJun_mRNA; ksynbasalcJunmRNA*Source; cJunmRNADegradation: cJun_mRNA => $Sink; kdegcJunmRNA*cJun_mRNA; cJunTranslation: cJun_mRNA => cJun_mRNA + cJun; ksyncJun*cJun_mRNA; cJunDegradation: cJun => $Sink; kdegcJun*cJun; p38phosphorylation: p38 + IRAK2_TRAF6 => p38_P + IRAK2_TRAF6; kphosp38*p38*IRAK2_TRAF6; p38dephosphorylation: p38_P => p38; kdephosp38*p38_P; p38dephosphorylationMKP1: p38_P + MKP1 => p38 + MKP1; kdephosp38MKP1*p38_P*MKP1; MMP1Transcription_AP1: cFos_cJun => cFos_cJun + MMP1_mRNA; ksynMMP1mRNA*cFos_cJun*kAP1activity; MMP1Transcription_cJun_dimer: cJun_dimer => cJun_dimer + MMP1_mRNA; ksynMMP1mRNAcJun*cJun_dimer; MMP1Translation: MMP1_mRNA => MMP1_mRNA + proMMP1; ksynMMP1*MMP1_mRNA; MMP1mRNADegradation: MMP1_mRNA => $Sink; kdegMMP1mRNA*MMP1_mRNA; proMMP1cleavageByMatriptase: proMMP1 + Matriptase => MMP1 + Matriptase; kactMMP1mat*proMMP1*Matriptase; proMMP1cleavageByMMP3: proMMP1 + MMP3 => MMP1 + MMP3; kactMMP1mmp3*proMMP1*MMP3; MMP1Degradation: MMP1 => $Sink; kdegMMP1*MMP1; MMP3Transcription_AP1: cFos_cJun => cFos_cJun + MMP3_mRNA; ksynMMP3mRNA*cFos_cJun*kAP1activity; MMP3Transcription_cJun_dimer: cJun_dimer => cJun_dimer + MMP3_mRNA; ksynMMP3mRNAcJun*cJun_dimer; MMP3Translation: MMP3_mRNA => MMP3_mRNA + proMMP3; ksynMMP3*MMP3_mRNA; MMP3mRNADegradation: MMP3_mRNA => $Sink; kdegMMP3mRNA*MMP3_mRNA; proMMP3cleavageByMatriptase: proMMP3 + Matriptase => MMP3 + Matriptase; kactMMP3mat*proMMP3*Matriptase; MMP3Degradation: MMP3 => $Sink; kdegMMP3*MMP3; MMP13Transcription_AP1: cFos_cJun => cFos_cJun + MMP13_mRNA; ksynMMP13mRNA*cFos_cJun*kAP1activity; MMP13Transcription_cJun_dimer: cJun_dimer => cJun_dimer + MMP13_mRNA; ksynMMP13mRNAcJun*cJun_dimer; MMP13Translation: MMP13_mRNA => MMP13_mRNA + proMMP13; ksynMMP13*MMP13_mRNA; MMP13mRNADegradation: MMP13_mRNA => $Sink; kdegMMP13mRNA*MMP13_mRNA; proMMP13cleavageByMMP3: proMMP13 + MMP3 => MMP13 + MMP3; kactMMP13mmp3*proMMP13*MMP3; MMP13Degradation: MMP13 => $Sink; kdegMMP13*MMP13; TIMP1Translation: TIMP1_mRNA => TIMP1_mRNA + TIMP1; ksynTIMP1*TIMP1_mRNA; TIMP1mRNADegradation: TIMP1_mRNA => $Sink; kdegTIMP1mRNA*TIMP1_mRNA; TIMP1Degradation: TIMP1 => $Sink; kdegTIMP1*TIMP1; ADAMTS4Transcription_AP1: cFos_cJun => cFos_cJun + ADAMTS4_mRNA; ksynADAMTS4mRNA*cFos_cJun*kAP1activity; ADAMTS4Transcription_cJun_dimer: cJun_dimer => cJun_dimer + ADAMTS4_mRNA; ksynADAMTS4mRNAcJun*cJun_dimer; ADAMTS4Translation: ADAMTS4_mRNA => ADAMTS4_mRNA + ADAMTS4; ksynADAMTS4*ADAMTS4_mRNA; ADAMTS4mRNADegradation: ADAMTS4_mRNA => $Sink; kdegADAMTS4mRNA*ADAMTS4_mRNA; ADAMTS4Degradation: ADAMTS4 => $Sink; kdegADAMTS4*ADAMTS4; PP4Synthesis: cFos_cJun => cFos_cJun + PP4; ksynPP4*cFos_cJun*kAP1activity; PP4Synthesis_cJun_dimer: cJun_dimer => cJun_dimer + PP4; ksynPP4cJun*cJun_dimer; DUSP16Synthesis: cFos_cJun => cFos_cJun + DUSP16; ksynDUSP16*cFos_cJun*kAP1activity; DUSP16Synthesis_cJun_dimer: cJun_dimer => cJun_dimer + DUSP16; ksynDUSP16cJun*cJun_dimer; PP4Degradation: PP4 => $Sink; kdegPP4*PP4; DUSP16Degradation: DUSP16 => $Sink; kdegDUSP16*DUSP16; TRAF6Inhibition: TRAF6 + PP4 => TRAF6_PP4; kinhibTRAF6*TRAF6*PP4; BoundTRAF6Inhibition: IRAK2_TRAF6 + PP4 => IRAK2_TRAF6_PP4; kinhibTRAF6*IRAK2_TRAF6*PP4; TRAF6PP4Disassociation: TRAF6_PP4 => TRAF6 + PP4; krelTRAF6PP4*TRAF6_PP4; IRAK2_TRAF6PP4Disassociation: IRAK2_TRAF6_PP4 => IRAK2_TRAF6 + PP4; krelTRAF6PP4*IRAK2_TRAF6_PP4; Transcription_cFos_byAP1: cFos_cJun => cFos_cJun + cFos_mRNA; ksyncFosmRNA*cFos_cJun*kAP1activity; cFosmRNA_Degradation: cFos_mRNA => $Sink; kdegcFosmRNA*cFos_mRNA; cFosSynthesis: cFos_mRNA => cFos_mRNA + cFos; ksyncFos*cFos_mRNA; cFosDegradation: cFos => $Sink; kdegcFos*cFos; cFosPhosphorylation_p38: p38_P + cFos => p38_P + cFos_P; kphoscFos*p38_P*cFos; cFosDephosphorylation: cFos_P => cFos; kdephoscFos*cFos_P; MKP1Synthesis: cFos_cJun => MKP1 + cFos_cJun; ksynMKP1*cFos_cJun*kAP1activity; MKP1Synthesis_cJun_dimer: cJun_dimer => MKP1 + cJun_dimer; ksynMKP1cJun*cJun_dimer; MKP1Degradation: MKP1 => $Sink; kdegMKP1*MKP1; cFosDephosphorylationByDusp16: cFos_P + DUSP16 => cFos + DUSP16; kdephoscFosDUSP16*cFos_P*DUSP16; cFoscJunBinding: cFos_P + cJun_P => cFos_cJun; kbincFoscJun*cFos_P*cJun_P; cFoscJunRelease: cFos_cJun => cFos_P + cJun_P; krelcFoscJun*cFos_cJun; OSM_OSMR_binding: OSM + OSMR => OSM_OSMR; kbinOSMOSMR*OSM*OSMR; OSM_OSMR_release: OSM_OSMR => OSM + OSMR; krelOSMOSMR*OSM_OSMR; OSM_OSMRa_binding: OSM + OSMRa => OSM_OSMRa; kbinOSMOSMRa*OSM*OSMRa; OSM_OSMRa_release: OSM_OSMRa => OSM + OSMRa; krelOSMOSMRa*OSM_OSMRa; JAK1_Phosphorylation: JAK1 + OSM_OSMR => JAK1_P + OSM_OSMR; kphosJAK1*JAK1*OSM_OSMR; JAK1_Dephosphorylation: JAK1_P => JAK1; kdephosJAK1*JAK1_P; JAK1_DephosphorylationByPTPRT: JAK1_P + PTPRT => JAK1 + PTPRT; kdephosJAK1PTPRT*JAK1_P*PTPRT; STAT3_Phosphorylation: STAT3_cyt + JAK1_P => STAT3_P_cyt + JAK1_P; kphosSTAT3*STAT3_cyt*JAK1_P; STAT3_cyt_Dephosphorylation: STAT3_P_cyt => STAT3_cyt; kdephosSTAT3*STAT3_P_cyt; STAT3_cyt_DephosphorylationByPTPRT: STAT3_P_cyt + PTPRT => STAT3_cyt + PTPRT; kdephosSTAT3PTPRT*STAT3_P_cyt*PTPRT; STAT3_nuc_Dephosphorylation: STAT3_P_nuc => STAT3_nuc; kdephosSTAT3nuc*STAT3_P_nuc; STAT3_nuc_DephosphorylationByPTPRT: STAT3_P_nuc + PTPRT => STAT3_nuc + PTPRT; kdephosSTAT3nucPTPRT*STAT3_P_nuc*PTPRT; STAT3_transport_to_nucleus: STAT3_P_cyt => STAT3_P_nuc; kcyt2nucSTAT3*STAT3_P_cyt; STAT3_transport_from_nucleus: STAT3_nuc => STAT3_cyt; knuc2cytSTAT3*STAT3_nuc; cFos_induction_by_STAT3: STAT3_P_nuc => STAT3_P_nuc + cFos_mRNA; ksyncFosmRNAStat3*STAT3_P_nuc; PTPRT_induction_by_STAT3: STAT3_P_nuc => STAT3_P_nuc + PTPRT; ksynPTPRT*STAT3_P_nuc; PTPRT_degradation: PTPRT => $Sink; kdegPTPRT*PTPRT; STAT3_induction_of_SOCS3: STAT3_P_nuc => STAT3_P_nuc + SOCS3_mRNA; ksynSOCS3mRNA*STAT3_P_nuc; SOCS3mRNAdegradation: SOCS3_mRNA => $Sink; kdegSOCS3mRNA*SOCS3_mRNA; SOCS3_translation: SOCS3_mRNA => SOCS3_mRNA + SOCS3; ksynSOCS3*SOCS3_mRNA; SOCS3_degradation: SOCS3 => $Sink; kdegSOCS3*SOCS3; SOCS3_OSMR_binding: SOCS3 + OSMR => OSMR_SOCS3; kbinSOCS3OSMR*SOCS3*OSMR; SOCS3_OSMR_release: OSMR_SOCS3 => SOCS3 + OSMR; krelSOCS3OSMR*OSMR_SOCS3; OSM_degradation: OSM => $Sink; kdegOSM*OSM; MMP1InhibtionByTIMP1: MMP1 + TIMP1 => MMP1_TIMP1; kinhibMMP1TIMP1*MMP1*TIMP1; MMP1_TIMP1release: MMP1_TIMP1 => MMP1 + TIMP1; krelMMP1*MMP1_TIMP1; MMP3InhibtionByTIMP1: MMP3 + TIMP1 => MMP3_TIMP1; kinhibMMP3TIMP1*MMP3*TIMP1; MMP3_TIMP1release: MMP3_TIMP1 => MMP3 + TIMP1; krelMMP3*MMP3_TIMP1; MMP13InhibtionByTIMP1: MMP13 + TIMP1 => MMP13_TIMP1; kinhibMMP13TIMP1*MMP13*TIMP1; MMP13_TIMP1release: MMP13_TIMP1 => MMP13 + TIMP1; krelMMP13*MMP13_TIMP1; ADAMTS4InhibtionByTIMP1: ADAMTS4 + TIMP1 => ADAMTS4_TIMP1; kinhibADAMTS4TIMP1*ADAMTS4*TIMP1; ADAMTS4_TIMP1release: ADAMTS4_TIMP1 => ADAMTS4 + TIMP1; krelADAMTS4TIMP1*ADAMTS4_TIMP1; Collagen2DegradationByMMP1: Collagen2 + MMP1 => MMP1 + ColFrag; kdegCollagen2mmp1*Collagen2*MMP1; Collagen2DegradationByMMP13: Collagen2 + MMP13 => MMP13 + ColFrag; kdegCollagen2mmp13*Collagen2*MMP13; AggrecanDegradationByADAMTS4: Aggrecan_Collagen2 + ADAMTS4 => ADAMTS4 + Collagen2 + AggFrag; kdegAggrecan*Aggrecan_Collagen2*ADAMTS4; MatriptaseSynthesis: cFos_cJun => Matriptase + cFos_cJun; ksynMatriptase*cFos_cJun*kAP1activity; MatriptaseDegradation: Matriptase => $Sink; kdegMatriptase*Matriptase; SP1Synthesis: cFos_cJun => SP1 + cFos_cJun; ksynSP1*cFos_cJun*kAP1activity; SP1Degradation: SP1 => $Sink; kdegSP1*SP1; SP1_TIMP1_DNAbinding: SP1 + TIMP1_DNA => SP1_TIMP1_DNA; kbinSP1TIMP1DNA*SP1*TIMP1_DNA; SP1_TIMP1_DNArelease: SP1_TIMP1_DNA => SP1 + TIMP1_DNA; krelSP1TIMP1DNA*SP1_TIMP1_DNA; TIMP1_transcription_STAT3: STAT3_P_nuc + TIMP1_DNA => STAT3_P_nuc + TIMP1_DNA + TIMP1_mRNA; ksynTIMP1mRNAStat3*STAT3_P_nuc*TIMP1_DNA; TIMP1BasalTranscription: TIMP1_DNA => TIMP1_mRNA + TIMP1_DNA; ksynbasalTIMP1mRNA*TIMP1_DNA; TIMP1Transcription_AP1: cFos_cJun + TIMP1_DNA => cFos_cJun + TIMP1_mRNA + TIMP1_DNA; ksynTIMP1mRNA*cFos_cJun*TIMP1_DNA*kAP1activity; TIMP3BasalTranscriptionn: $Source => TIMP3_mRNA; ksynbasalTIMP3mRNA*Source; TIMP3Transcription_AP1: cFos_cJun => cFos_cJun + TIMP3_mRNA; ksynTIMP3mRNA*cFos_cJun*kAP1activity; TIMP3Transcription_STAT3: STAT3_P_nuc => STAT3_P_nuc + TIMP3_mRNA; ksynTIMP3mRNAStat3*STAT3_P_nuc*kAP1activity; TIMP3Translation: TIMP3_mRNA => TIMP3_mRNA + TIMP3; ksynTIMP3*TIMP3_mRNA; TIMP3mRNADegradation: TIMP3_mRNA => $Sink; kdegTIMP3mRNA*TIMP3_mRNA; TIMP3Degradation: TIMP3 => $Sink; kdegTIMP3*TIMP3; ADAMTS4InhibitionByTimp3: TIMP3 + ADAMTS4 => ADAMTS4_TIMP3; kinhibADAMTS4TIMP3*TIMP3*ADAMTS4; ADAMTS4_TIMP3release: ADAMTS4_TIMP3 => ADAMTS4 + TIMP3; krelADAMTS4TIMP3*ADAMTS4_TIMP3; MMP1InhibtionByTIMP3: MMP1 + TIMP3 => MMP1_TIMP3; kinhibMMP1TIMP3*MMP1*TIMP3; MMP1_TIMP3release: MMP1_TIMP3 => MMP1 + TIMP3; krelMMP1TIMP3*MMP1_TIMP3; MMP3InhibtionByTIMP3: MMP3 + TIMP3 => MMP3_TIMP3; kinhibMMP3TIMP3*MMP3*TIMP3; MMP3_TIMP3release: MMP3_TIMP3 => MMP3 + TIMP3; krelMMP3TIMP3*MMP3_TIMP3; MMP13InhibtionByTIMP3: MMP13 + TIMP3 => MMP13_TIMP3; kinhibMMP13TIMP3*MMP13*TIMP3; MMP13_TIMP3release: MMP13_TIMP3 => MMP13 + TIMP3; krelMMP13TIMP3*MMP13_TIMP3; // Species initializations: ADAMTS4_mRNA = 0; cFos = 0; cFos_mRNA = 0; cJun = 100/cytoplasm; cJun_mRNA = 5/cytoplasm; DUSP16 = 0; IRAK2 = 100/cytoplasm; IRAK2_TRAF6 = 0; IRAK2_TRAF6_PP4 = 0; JAK1 = 100/cytoplasm; JAK1_P = 0; JNK = 100/cytoplasm; JNK_P = 0; Matriptase = 100/cytoplasm; MKP1 = 0; MMP1_mRNA = 0; MMP3_mRNA = 0; MMP13_mRNA = 0; p38 = 100/cytoplasm; p38_P = 0; PP4 = 0; proMMP1 = 0; proMMP3 = 0; proMMP13 = 0; PTPRT = 0; SOCS3 = 0; SOCS3_mRNA = 0; STAT3_cyt = 100/cytoplasm; STAT3_P_cyt = 0; TIMP1_mRNA = 20/cytoplasm; TIMP3_mRNA = 20/cytoplasm; TRAF6 = 100/cytoplasm; TRAF6_PP4 = 0; ADAMTS4 = 0; ADAMTS4_TIMP1 = 0; ADAMTS4_TIMP3 = 0; Aggrecan = 0; Aggrecan_Collagen2 = 100000/ecm; AggFrag = 0; ColFrag = 0; Collagen2 = 0; IL1 = 100/ecm; MMP1 = 0; MMP1_TIMP1 = 0; MMP1_TIMP3 = 0; MMP3 = 0; MMP3_TIMP1 = 0; MMP3_TIMP3 = 0; MMP13 = 0; MMP13_TIMP1 = 0; MMP13_TIMP3 = 0; OSM = 1000/ecm; TIMP1 = 200/ecm; TIMP3 = 200/ecm; IL1_IL1R = 0; IL1_IL1Ra = 0; IL1_IL1R_IRAK2 = 0; IL1R = 100/membrane; IL1Ra = 0; OSM_OSMR = 0; OSM_OSMRa = 0; OSMR_SOCS3 = 0; OSMR = 100/membrane; OSMRa = 0; cFos_cJun = 0; cFos_P = 0; cJun_P = 0; cJun_dimer = 0; SP1 = 0; SP1_TIMP1_DNA = 0; STAT3_nuc = 0; STAT3_P_nuc = 0; TIMP1_DNA = 2/nucleus; Source = 1/cytoplasm; Sink = 1/cytoplasm; // Compartment initializations: cytoplasm = 1; nucleus = 1; membrane = 1; ecm = 1; // Variable initializations: kactMMP13mmp3 = 5e-008; kactMMP1mat = 1e-009; kactMMP1mmp3 = 1e-008; kactMMP3mat = 4e-006; kAP1activity = 1; kbincFoscJun = 5e-005; kbinIL1IL1R = 0.0001; kbinIL1IL1Ra = 0.0001; kbinIRAK2 = 5e-005; kbinOSMOSMR = 1e-005; kbinOSMOSMRa = 0.0001; kbinSOCS3OSMR = 0.005; kbinSP1TIMP1DNA = 1e-005; kbinTRAF6 = 1e-005; kcyt2nucSTAT3 = 0.001; kdedimercJun = 0.01; kdegADAMTS4 = 5e-005; kdegADAMTS4mRNA = 1.4e-005; kdegAggrecan = 3e-008; kdegcFos = 0.0002; kdegcFosmRNA = 0.003; kdegcJun = 0.00013; kdegcJunmRNA = 0.003; kdegCollagen2mmp1 = 5e-012; kdegCollagen2mmp13 = 5e-011; kdegDUSP16 = 0.00013; kdegIL1 = 0.0002; kdegMatriptase = 8e-006; kdegMKP1 = 0.0001; kdegMMP1 = 1e-006; kdegMMP13 = 1e-006; kdegMMP13mRNA = 6.4e-006; kdegMMP1mRNA = 6.4e-006; kdegMMP3 = 1e-006; kdegMMP3mRNA = 6.4e-006; kdegOSM = 4.8e-005; kdegPP4 = 0.0001; kdegPTPRT = 5e-005; kdegSOCS3 = 0.0008; kdegSOCS3mRNA = 0.0004; kdegSP1 = 2e-005; kdegTIMP1 = 2e-005; kdegTIMP1mRNA = 1.4e-005; kdegTIMP3 = 2e-005; kdegTIMP3mRNA = 1.4e-005; kdephoscFos = 0.0001; kdephoscFosDUSP16 = 0.0001; kdephoscJun = 0.01; kdephosJAK1 = 0.0004; kdephosJAK1PTPRT = 0.004; kdephosJNK = 0.001; kdephosJNKDUSP16 = 0.001; kdephosp38 = 0.001; kdephosp38MKP1 = 1e-005; kdephosSTAT3 = 1e-005; kdephosSTAT3nuc = 1e-007; kdephosSTAT3nucPTPRT = 0.0005; kdephosSTAT3PTPRT = 0.0008; kdimercJun = 5e-005; kinhibADAMTS4TIMP1 = 3e-006; kinhibADAMTS4TIMP3 = 0.0005; kinhibMMP13TIMP1 = 3e-007; kinhibMMP13TIMP3 = 1e-008; kinhibMMP1TIMP1 = 3e-007; kinhibMMP1TIMP3 = 1e-008; kinhibMMP3TIMP1 = 3e-007; kinhibMMP3TIMP3 = 1e-008; kinhibTRAF6 = 0.5; knuc2cytSTAT3 = 0.001; kphoscFos = 5e-007; kphoscJun = 0.0001; kphosJAK1 = 1e-005; kphosJNK = 0.0001; kphosp38 = 0.0001; kphosSTAT3 = 0.005; krelADAMTS4TIMP1 = 0.001; krelADAMTS4TIMP3 = 0.001; krelcFoscJun = 4e-005; krelIL1IL1R = 0.001; krelIL1IL1Ra = 0.0001; krelIRAK2 = 0.001; krelMMP1 = 0.001; krelMMP13 = 0.001; krelMMP13TIMP3 = 0.001; krelMMP1TIMP3 = 0.001; krelMMP3 = 0.001; krelMMP3TIMP3 = 0.001; krelOSMOSMR = 1e-005; krelOSMOSMRa = 1e-005; krelSOCS3OSMR = 1e-005; krelSP1TIMP1DNA = 5e-006; krelTRAF6 = 0.0001; krelTRAF6PP4 = 1e-006; ksynADAMTS4 = 0.0005; ksynADAMTS4mRNA = 0.0005; ksynADAMTS4mRNAcJun = 4e-006; ksynbasalcJunmRNA = 0.015; ksynbasalTIMP1mRNA = 0.00014; ksynbasalTIMP3mRNA = 0.00028; ksyncFos = 0.001; ksyncFosmRNA = 5e-006; ksyncFosmRNAStat3 = 0.05; ksyncJun = 0.0026; ksyncJunmRNA = 0.0125; ksyncJunmRNAcJun = 0.005; ksynDUSP16 = 0.005; ksynDUSP16cJun = 0.0002; ksynMatriptase = 9e-010; ksynMKP1 = 2.5e-005; ksynMKP1cJun = 1e-006; ksynMMP1 = 0.00015; ksynMMP13 = 1.5e-005; ksynMMP13mRNA = 0.0005; ksynMMP13mRNAcJun = 2e-005; ksynMMP1mRNA = 0.005; ksynMMP1mRNAcJun = 0.0002; ksynMMP3 = 3e-005; ksynMMP3mRNA = 0.005; ksynMMP3mRNAcJun = 0.0002; ksynPP4 = 0.005; ksynPP4cJun = 0.0002; ksynPTPRT = 0.0001; ksynSOCS3 = 0.001; ksynSOCS3mRNA = 0.006; ksynSP1 = 2e-005; ksynTIMP1 = 0.0002; ksynTIMP1mRNA = 5e-007; ksynTIMP1mRNAStat3 = 4e-005; ksynTIMP3 = 0.0004; ksynTIMP3mRNA = 5e-007; ksynTIMP3mRNAStat3 = 4e-005; // Other declarations: const cytoplasm, nucleus, membrane, ecm, kactMMP13mmp3, kactMMP1mat, kactMMP1mmp3; const kactMMP3mat, kAP1activity, kbincFoscJun, kbinIL1IL1R, kbinIL1IL1Ra; const kbinIRAK2, kbinOSMOSMR, kbinOSMOSMRa, kbinSOCS3OSMR, kbinSP1TIMP1DNA; const kbinTRAF6, kcyt2nucSTAT3, kdedimercJun, kdegADAMTS4, kdegADAMTS4mRNA; const kdegAggrecan, kdegcFos, kdegcFosmRNA, kdegcJun, kdegcJunmRNA, kdegCollagen2mmp1; const kdegCollagen2mmp13, kdegDUSP16, kdegIL1, kdegMatriptase, kdegMKP1; const kdegMMP1, kdegMMP13, kdegMMP13mRNA, kdegMMP1mRNA, kdegMMP3, kdegMMP3mRNA; const kdegOSM, kdegPP4, kdegPTPRT, kdegSOCS3, kdegSOCS3mRNA, kdegSP1, kdegTIMP1; const kdegTIMP1mRNA, kdegTIMP3, kdegTIMP3mRNA, kdephoscFos, kdephoscFosDUSP16; const kdephoscJun, kdephosJAK1, kdephosJAK1PTPRT, kdephosJNK, kdephosJNKDUSP16; const kdephosp38, kdephosp38MKP1, kdephosSTAT3, kdephosSTAT3nuc, kdephosSTAT3nucPTPRT; const kdephosSTAT3PTPRT, kdimercJun, kinhibADAMTS4TIMP1, kinhibADAMTS4TIMP3; const kinhibMMP13TIMP1, kinhibMMP13TIMP3, kinhibMMP1TIMP1, kinhibMMP1TIMP3; const kinhibMMP3TIMP1, kinhibMMP3TIMP3, kinhibTRAF6, knuc2cytSTAT3, kphoscFos; const kphoscJun, kphosJAK1, kphosJNK, kphosp38, kphosSTAT3, krelADAMTS4TIMP1; const krelADAMTS4TIMP3, krelcFoscJun, krelIL1IL1R, krelIL1IL1Ra, krelIRAK2; const krelMMP1, krelMMP13, krelMMP13TIMP3, krelMMP1TIMP3, krelMMP3, krelMMP3TIMP3; const krelOSMOSMR, krelOSMOSMRa, krelSOCS3OSMR, krelSP1TIMP1DNA, krelTRAF6; const krelTRAF6PP4, ksynADAMTS4, ksynADAMTS4mRNA, ksynADAMTS4mRNAcJun, ksynbasalcJunmRNA; const ksynbasalTIMP1mRNA, ksynbasalTIMP3mRNA, ksyncFos, ksyncFosmRNA, ksyncFosmRNAStat3; const ksyncJun, ksyncJunmRNA, ksyncJunmRNAcJun, ksynDUSP16, ksynDUSP16cJun; const ksynMatriptase, ksynMKP1, ksynMKP1cJun, ksynMMP1, ksynMMP13, ksynMMP13mRNA; const ksynMMP13mRNAcJun, ksynMMP1mRNA, ksynMMP1mRNAcJun, ksynMMP3, ksynMMP3mRNA; const ksynMMP3mRNAcJun, ksynPP4, ksynPP4cJun, ksynPTPRT, ksynSOCS3, ksynSOCS3mRNA; const ksynSP1, ksynTIMP1, ksynTIMP1mRNA, ksynTIMP1mRNAStat3, ksynTIMP3; const ksynTIMP3mRNA, ksynTIMP3mRNAStat3; // Unit definitions: unit substance = item; end