// Created by libAntimony v2.8.0 model *MODEL1209230000() // Compartments and Species: compartment cell_nsclc; species EGFR_active in cell_nsclc, D_SOS in cell_nsclc, A_SOS in cell_nsclc; species Raf in cell_nsclc, Ras_active in cell_nsclc, Mek_active in cell_nsclc; species ERK in cell_nsclc, ERK_active in cell_nsclc, IGFR_active in cell_nsclc; species PI3KCA in cell_nsclc, PI3KCA_active in cell_nsclc, AKT_active in cell_nsclc; species AKT in cell_nsclc, PP2A in cell_nsclc, Ras in cell_nsclc, Raf_active in cell_nsclc; species Mek in cell_nsclc, RasGapActive in cell_nsclc, RafPP in cell_nsclc; species P90RskInactive in cell_nsclc, P90Rsk_Active in cell_nsclc; // Reactions: SOS_conformational_activation: D_SOS + EGFR_active => A_SOS + EGFR_active; (SOS_conformational_activation_k_SOS_E*EGFR_active*D_SOS^SOS_conformational_activation_n_SOS)/(SOS_conformational_activation_KM_SOS_E^SOS_conformational_activation_n_SOS + D_SOS^SOS_conformational_activation_n_SOS); kRas_Activation: A_SOS + Ras => Ras_active + A_SOS; (A_SOS*kRas_Activation_k_Ras_SOS*Ras^kRas_Activation_n_Ras_SOS)/(kRas_Activation_KM_Ras_SOS^kRas_Activation_n_Ras_SOS + Ras^kRas_Activation_n_Ras_SOS); EGFR_degradation: EGFR_active => ; gamma_EGFR*EGFR_active; ERK_activationBy_Mek: ERK + Mek_active => ERK_active + Mek_active; (Mek_active*ERK_activationBy_Mek_k_ERK_MekActive*ERK)/(ERK_activationBy_Mek_KM_ERK_MekActive + ERK); SOS_deactivationBy_P90: P90Rsk_Active + A_SOS => D_SOS + P90Rsk_Active; (P90Rsk_Active*SOS_deactivationBy_P90_k_D_SOS_P90Rsk*A_SOS^SOS_deactivationBy_P90_n_D_SOS)/(SOS_deactivationBy_P90_KM_D_SOS_P90Rsk^SOS_deactivationBy_P90_n_D_SOS + A_SOS^SOS_deactivationBy_P90_n_D_SOS); SOS_activationBy_IGF: IGFR_active + D_SOS => A_SOS + IGFR_active; (IGFR_active*SOS_activationBy_IGF_k_A_SOS_I*D_SOS^SOS_activationBy_IGF_n_A_SOS_I)/(SOS_activationBy_IGF_KM_A_SOS_I^SOS_activationBy_IGF_n_A_SOS_I + D_SOS^SOS_activationBy_IGF_n_A_SOS_I); PI3KCA_activationBy_IGF1R: PI3KCA + IGFR_active => PI3KCA_active + IGFR_active; (IGFR_active*PI3KCA_activationBy_IGF1R_k_PI3K_IGF1R*PI3KCA^PI3KCA_activationBy_IGF1R_n_PI3K_I)/(PI3KCA_activationBy_IGF1R_KM_PI3K_IGF1R^PI3KCA_activationBy_IGF1R_n_PI3K_I + PI3KCA^PI3KCA_activationBy_IGF1R_n_PI3K_I); PI3KCA_activationBy_EGF: PI3KCA + EGFR_active => PI3KCA_active + EGFR_active; (EGFR_active*PI3KCA_activationBy_EGF_k_PI3K_EGF1R*EGFR_active*PI3KCA^PI3KCA_activationBy_EGF_n_PI3K_E)/(PI3KCA_activationBy_EGF_KM_PI3K_EGF1R^PI3KCA_activationBy_EGF_n_PI3K_E + PI3KCA^PI3KCA_activationBy_EGF_n_PI3K_E); Akt_activationBy_PI3KCA: AKT + PI3KCA_active => AKT_active + PI3KCA_active; (PI3KCA_active*Akt_activationBy_PI3KCA_k_AKT_PI3K*AKT^Akt_activationBy_PI3KCA_n_AKT_PI3K)/(Akt_activationBy_PI3KCA_KM_AKT_PI3K^Akt_activationBy_PI3KCA_n_AKT_PI3K + AKT^Akt_activationBy_PI3KCA_n_AKT_PI3K); Akt_deactivation: AKT_active => AKT; Akt_deactivation_kd_AKT*AKT_active; ERK_deactivationBy_PP2A: ERK_active + PP2A => ERK + PP2A; (PP2A*ERK_deactivationBy_PP2A_k_ERKactive_PP2A*ERK_active^ERK_deactivationBy_PP2A_n_ERKactive_PP2A)/(ERK_deactivationBy_PP2A_KM_ERKactive_PP2A^ERK_deactivationBy_PP2A_n_ERKactive_PP2A + ERK_active^ERK_deactivationBy_PP2A_n_ERKactive_PP2A); PI3KCA_activationBy_kRas: PI3KCA + Ras_active => PI3KCA_active + Ras_active; (Ras_active*PI3KCA_activationBy_kRas_k_PI3K_Ras*PI3KCA^PI3KCA_activationBy_kRas_n_PI3K_Ras)/(PI3KCA_activationBy_kRas_KM_PI3K_Ras^PI3KCA_activationBy_kRas_n_PI3K_Ras + PI3KCA^PI3KCA_activationBy_kRas_n_PI3K_Ras); Raf_activationBy_kRas: Ras_active + Raf => Raf_active + Ras_active; (Ras_active*Raf_activationBy_kRas_k_Raf_RasActive*Raf^Raf_activationBy_kRas_n_Raf_RasActive)/(Raf_activationBy_kRas_KM_Raf_RasActive + Raf^Raf_activationBy_kRas_n_Raf_RasActive); Mek_activationBy_Raf: Raf_active + Mek => Mek_active + Raf_active; (Raf_active*Mek_activationBy_Raf_k_Mek_PP2A*Mek^Mek_activationBy_Raf_n_Mek_PP2A)/(Mek_activationBy_Raf_KM_MekPP2A^Mek_activationBy_Raf_n_Mek_PP2A + Mek^Mek_activationBy_Raf_n_Mek_PP2A); Raf_deactivationBy_Akt: AKT_active + Raf_active => Raf + AKT_active; (AKT_active*Raf_deactivationBy_Akt_k_Raf_AKT*Raf_active^Raf_deactivationBy_Akt_n_Raf_AKT)/(Raf_deactivationBy_Akt_KM_Raf_AKT^Raf_deactivationBy_Akt_n_Raf_AKT + Raf_active^Raf_deactivationBy_Akt_n_Raf_AKT); Ras_deactivation: RasGapActive + Ras_active => Ras + RasGapActive; (RasGapActive*Ras_deactivation_k_RasActiveRasGap*Ras_active^Ras_deactivation_n_RasActiveRasGap)/(Ras_deactivation_KM_RasActiveRasGap^Ras_deactivation_n_RasActiveRasGap + Ras_active^Ras_deactivation_n_RasActiveRasGap); Mek_deactivation: PP2A + Mek_active => Mek + PP2A; (PP2A*Mek_deactivation_k_MekActivePP2A*Mek_active^Mek_deactivation_n_MekActivePP2A)/(Mek_deactivation_KM_MekActivePP2A^Mek_deactivation_n_MekActivePP2A + Mek_active^Mek_deactivation_n_MekActivePP2A); IGFR_active_degradation: IGFR_active => ; gamma_IGFR*IGFR_active; PI3KCA_deactivation: PI3KCA_active => PI3KCA; kd_PI3K_a*PI3KCA_active; Raf_deactivation: RafPP + Raf_active => Raf + RafPP; (RafPP*Raf_deactivation_k_RasActive_RafPP*Raf_active^Raf_deactivation_n_RasActive_RafPP)/(Raf_deactivation_KM_RasActive_RafPP^Raf_deactivation_n_RasActive_RafPP + Raf_active^Raf_deactivation_n_RasActive_RafPP); P90_activationBy_ERK: P90RskInactive + ERK_active => P90Rsk_Active + ERK_active; (ERK_active*k_P90Rsk_ERKActive*P90RskInactive)/(KM_P90Rsk_ERKActive + P90RskInactive); P90_deactivation: P90Rsk_Active => P90RskInactive; P90_deactivation_kd_P90Rsk*P90Rsk_Active; // Species initializations: EGFR_active = 8000/cell_nsclc; D_SOS = 120000/cell_nsclc; A_SOS = 0; Raf = 120000/cell_nsclc; Ras_active = 0; Mek_active = 0; ERK = 600000/cell_nsclc; ERK_active = 0; IGFR_active = 800/cell_nsclc; PI3KCA = 120000/cell_nsclc; PI3KCA_active = 0; AKT_active = 0; AKT = 600000/cell_nsclc; PP2A = 120000/cell_nsclc; Ras = 120000/cell_nsclc; Raf_active = 0; Mek = 600000/cell_nsclc; RasGapActive = 120000/cell_nsclc; RafPP = 120000/cell_nsclc; P90RskInactive = 120000/cell_nsclc; P90Rsk_Active = 0; // Compartment initializations: cell_nsclc = 1; // Variable initializations: gamma_IGFR = 0.02; kd_PI3K_a = 0.005; k_P90Rsk_ERKActive = 0.0213697; KM_P90Rsk_ERKActive = 763523; gamma_EGFR = 0.02; SOS_conformational_activation_k_SOS_E = 694.731; SOS_conformational_activation_n_SOS = 1; SOS_conformational_activation_KM_SOS_E = 6086070; kRas_Activation_k_Ras_SOS = 32.344; kRas_Activation_n_Ras_SOS = 1; kRas_Activation_KM_Ras_SOS = 35954.3; ERK_activationBy_Mek_k_ERK_MekActive = 9.85367; ERK_activationBy_Mek_KM_ERK_MekActive = 1007340; SOS_deactivationBy_P90_k_D_SOS_P90Rsk = 161197; SOS_deactivationBy_P90_n_D_SOS = 1; SOS_deactivationBy_P90_KM_D_SOS_P90Rsk = 896896; SOS_activationBy_IGF_k_A_SOS_I = 500; SOS_activationBy_IGF_n_A_SOS_I = 1; SOS_activationBy_IGF_KM_A_SOS_I = 100000; PI3KCA_activationBy_IGF1R_k_PI3K_IGF1R = 10.6737; PI3KCA_activationBy_IGF1R_n_PI3K_I = 1; PI3KCA_activationBy_IGF1R_KM_PI3K_IGF1R = 184912; PI3KCA_activationBy_EGF_k_PI3K_EGF1R = 10.6737; PI3KCA_activationBy_EGF_n_PI3K_E = 1; PI3KCA_activationBy_EGF_KM_PI3K_EGF1R = 184912; Akt_activationBy_PI3KCA_k_AKT_PI3K = 0.0566279; Akt_activationBy_PI3KCA_n_AKT_PI3K = 1; Akt_activationBy_PI3KCA_KM_AKT_PI3K = 653951; Akt_deactivation_kd_AKT = 0.005; ERK_deactivationBy_PP2A_k_ERKactive_PP2A = 8.8912; ERK_deactivationBy_PP2A_n_ERKactive_PP2A = 1; ERK_deactivationBy_PP2A_KM_ERKactive_PP2A = 3496490; PI3KCA_activationBy_kRas_k_PI3K_Ras = 0.0771067; PI3KCA_activationBy_kRas_n_PI3K_Ras = 1; PI3KCA_activationBy_kRas_KM_PI3K_Ras = 272056; Raf_activationBy_kRas_k_Raf_RasActive = 0.884096; Raf_activationBy_kRas_n_Raf_RasActive = 1; Raf_activationBy_kRas_KM_Raf_RasActive = 62464.6; Mek_activationBy_Raf_k_Mek_PP2A = 185.759; Mek_activationBy_Raf_n_Mek_PP2A = 1; Mek_activationBy_Raf_KM_MekPP2A = 4768350; Raf_deactivationBy_Akt_k_Raf_AKT = 15.1212; Raf_deactivationBy_Akt_n_Raf_AKT = 1; Raf_deactivationBy_Akt_KM_Raf_AKT = 119355; Ras_deactivation_k_RasActiveRasGap = 1509.36; Ras_deactivation_n_RasActiveRasGap = 1; Ras_deactivation_KM_RasActiveRasGap = 1432410; Mek_deactivation_k_MekActivePP2A = 2.83243; Mek_deactivation_n_MekActivePP2A = 1; Mek_deactivation_KM_MekActivePP2A = 518753; Raf_deactivation_k_RasActive_RafPP = 0.126329; Raf_deactivation_n_RasActive_RafPP = 1; Raf_deactivation_KM_RasActive_RafPP = 1061.71; P90_deactivation_kd_P90Rsk = 0.005; // Other declarations: const cell_nsclc, gamma_IGFR, kd_PI3K_a, k_P90Rsk_ERKActive, KM_P90Rsk_ERKActive; const gamma_EGFR; // Display Names: SOS_conformational_activation is "SOS conformational activation"; kRas_Activation is "kRas Activation"; EGFR_degradation is "EGFR degradation"; ERK_activationBy_Mek is "ERK activation by Mek"; SOS_deactivationBy_P90 is "SOS deactivation by P90"; SOS_activationBy_IGF is "SOS activation by IGF"; PI3KCA_activationBy_IGF1R is "PI3KCA activation by IGF1R"; PI3KCA_activationBy_EGF is "PI3KCA activation by EGF"; Akt_activationBy_PI3KCA is "Akt activation by PI3KCA"; Akt_deactivation is "Akt deactivation"; ERK_deactivationBy_PP2A is "ERK deactivation by PP2A"; PI3KCA_activationBy_kRas is "PI3KCA activation by kRas"; Raf_activationBy_kRas is "Raf activation by kRas"; Mek_activationBy_Raf is "Mek activation by Raf"; Raf_deactivationBy_Akt is "Raf deactivation by Akt"; Ras_deactivation is "Ras deactivation by RasGab"; Mek_deactivation is "Mek deactivation by PP2A"; IGFR_active_degradation is "IGFR active degradation"; PI3KCA_deactivation is "PI3KCA deactivation"; Raf_deactivation is "Raf deactivation by RafPP"; P90_activationBy_ERK is "P90 activation by ERK"; P90_deactivation is "P90 deactivation"; end