// Created by libAntimony v2.8.0 model *chance() // Compartments and Species: compartment cell; species GLU in cell, ENZ in cell, ENG in cell, TP1 in cell, ADP in cell; species GLP in cell, ETZ in cell, ETG in cell, GPP in cell, GAP in cell; species DHA in cell, DPN in cell, DPH in cell, PID in cell, DGA in cell; species PGA in cell, PYR in cell, LAC in cell, DIN in cell, DIH in cell; species XI in cell, XSI in cell, OXY in cell, XSP in cell, TP2 in cell; species DBP in cell, PUE in cell, PPP in cell, AGP in cell, MOD in cell; species MOB in cell, MOX in cell; // Assignment Rules: GLU_0 := GLU/0.003; ENZ_0 := ENZ/1.020000e-005; ENG_0 := ENG/1.020000e-005; TP1_0 := TP1/0.0015; ADP_0 := ADP/0.001; GLP_0 := GLP/0.001; ETZ_0 := ETZ/1.000000e-005; ETG_0 := ETG/1.000000e-005; GPP_0 := GPP/0.001; GAP_0 := GAP/0.0002; DHA_0 := DHA/0.0013; DPN_0 := DPN/0.00025; DPH_0 := DPH/0.0002; PID_0 := PID/0.005; DGA_0 := DGA/0.0002; PGA_0 := PGA/0.0002; PYR_0 := PYR/0.002; LAC_0 := LAC/0.0012; DIN_0 := DIN/7.000000e-005; DIH_0 := DIH/7.000000e-005; XI_0 := XI/6.000000e-005; XSI_0 := XSI/6.000000e-005; OXY_0 := OXY/0.0005; XSP_0 := XSP/6.000000e-005; TP2_0 := TP2/0.0015; DBP_0 := DBP/0.025; PUE_0 := PUE/3.060000e-006; PPP_0 := PPP/3.06; AGP_0 := AGP/0.0013; MOD_0 := MOD/5.000000e-005; MOB_0 := MOB/0.0001; MOX_0 := MOX/5.000000e-005; // Reactions: r_1: GLU + ENZ => ENG; cell*1.000000e-006*r_1_k*GLU*ENZ; r_2: ENG + TP1 => ADP + GLP + ENZ; cell*1.000000e-006*r_2_k*ENG*TP1; r_3: GLP + ETZ => ETG; cell*1.000000e-006*r_3_k*GLP*ETZ; r_4: ETG + TP1 => GPP + ETZ + ADP; cell*1.000000e-006*r_4_k*ETG*TP1; r_5: GPP => GAP + DHA; cell*1.000000e-006*r_5_k*GPP; r_6: DHA + DPH => AGP + DPN; cell*1.000000e-006*r_6_k*DHA*DPH; r_7: AGP + DPN => DHA + DPH; cell*1.000000e-006*r_7_k*AGP*DPN; r_8: GAP + MOD => MOB + DPH; cell*1.000000e-006*r_8_k*GAP*MOD; r_9: MOB + PID => DGA + MOX; cell*1.000000e-006*r_9_k*MOB*PID; r_10: MOX + DPN => MOD; cell*1.000000e-006*r_10_k*MOX*DPN; r_11: DGA + ADP => TP1 + PGA; cell*1.000000e-006*r_11_k*DGA*ADP; r_12: PGA + ADP => TP1 + PYR; cell*1.000000e-006*r_12_k*PGA*ADP; r_13: PYR + DPH => LAC + DPN; cell*1.000000e-006*r_13_k*PYR*DPH; r_14: LAC + DPN => PYR + DPH; cell*1.000000e-006*r_14_k*LAC*DPN; r_15: PYR + 4DIN => 4DIH; cell*1.000000e-006*r_15_k*PYR*DIN; r_16: DIH + 3XI + OXY => 3XSI + DIN; cell*1.000000e-006*r_16_k*DIH*XI*OXY; r_17: XSI + PID => XSP; cell*1.000000e-006*r_17_k*XSI*PID; r_18: XSP + ADP => TP2 + XI; cell*1.000000e-006*r_18_k*XSP*ADP; r_19: XSI => XI; cell*1.000000e-006*r_19_k*XSI*DBP; r_20: TP2 => TP1; cell*1.000000e-006*r_20_k*TP2*DBP; r_21: TP1 + PUE => PPP; cell*1.000000e-006*r_21_k*TP1*PUE; r_22: PPP => ADP + PUE + PID; cell*1.000000e-006*r_22_k*PPP; // Events: e_1: at time >= 64: GLU = 0.003; e_2: at time >= 119: DBP = 0.025; // Species initializations: GLU = 0; ENZ = 1e-005; ENG = 0; TP1 = 0.0005; ADP = 0.0001; GLP = 0; ETZ = 1e-005; ETG = 0; GPP = 0; GAP = 0; DHA = 0; DPN = 0.0001; DPH = 0.0001; PID = 0.004; DGA = 0; PGA = 0; PYR = 0.001; LAC = 0.001; DIN = 3e-005; DIH = 3e-005; XI = 2e-005; XSI = 2e-005; OXY = 0.0005; XSP = 2e-005; TP2 = 0.0005; DBP = 0; PUE = 2e-006; PPP = 1e-006; AGP = 0; MOD = 5e-005; MOB = 0; MOX = 0; // Compartment initializations: cell = 1; GLU_0 has dimensionless; ENZ_0 has dimensionless; ENG_0 has dimensionless; TP1_0 has dimensionless; ADP_0 has dimensionless; GLP_0 has dimensionless; ETZ_0 has dimensionless; ETG_0 has dimensionless; GPP_0 has dimensionless; GAP_0 has dimensionless; DHA_0 has dimensionless; DPN_0 has dimensionless; DPH_0 has dimensionless; PID_0 has dimensionless; DGA_0 has dimensionless; PGA_0 has dimensionless; PYR_0 has dimensionless; LAC_0 has dimensionless; DIN_0 has dimensionless; DIH_0 has dimensionless; XI_0 has dimensionless; XSI_0 has dimensionless; OXY_0 has dimensionless; XSP_0 has dimensionless; TP2_0 has dimensionless; DBP_0 has dimensionless; PUE_0 has dimensionless; PPP_0 has dimensionless; AGP_0 has dimensionless; MOD_0 has dimensionless; MOB_0 has dimensionless; MOX_0 has dimensionless; // Variable initializations: r_1_k = 3000000000; r_1_k has per_M_per_s; r_2_k = 10000000000; r_2_k has per_M_per_s; r_3_k = 40000000000; r_3_k has per_M_per_s; r_4_k = 40000000000; r_4_k has per_M_per_s; r_5_k = 100000; r_5_k has per_s; r_6_k = 2000000000; r_6_k has per_M_per_s; r_7_k = 80000000; r_7_k has per_M_per_s; r_8_k = 600000000000; r_8_k has per_M_per_s; r_9_k = 400000000; r_9_k has per_M_per_s; r_10_k = 6000000000; r_10_k has per_M_per_s; r_11_k = 10000000000; r_11_k has per_M_per_s; r_12_k = 5000000000; r_12_k has per_M_per_s; r_13_k = 500000000; r_13_k has per_M_per_s; r_14_k = 10000000; r_14_k has per_M_per_s; r_15_k = 20000000; r_15_k has per_M_per_s; r_16_k = 7500000000000; r_16_k has per_M_squared_per_s; r_17_k = 400000000; r_17_k has per_M_per_s; r_18_k = 15000000000; r_18_k has per_M_per_s; r_19_k = 120000000; r_19_k has per_M_per_s; r_20_k = 4000000; r_20_k has per_M_per_s; r_21_k = 3000000000; r_21_k has per_M_per_s; r_22_k = 2000000; r_22_k has per_s; // Other declarations: var GLU_0, ENZ_0, ENG_0, TP1_0, ADP_0, GLP_0, ETZ_0, ETG_0, GPP_0, GAP_0; var DHA_0, DPN_0, DPH_0, PID_0, DGA_0, PGA_0, PYR_0, LAC_0, DIN_0, DIH_0; var XI_0, XSI_0, OXY_0, XSP_0, TP2_0, DBP_0, PUE_0, PPP_0, AGP_0, MOD_0; var MOB_0, MOX_0; const cell; // Unit definitions: unit per_s = 1 / 1e1 second; unit per_M_per_s = 1e1 litre / (1e1 mole * 1e1 second); unit per_M_squared_per_s = (1e1 litre)^2 / ((1e1 mole)^2 * 1e1 second); // Display Names: per_s is "per second"; per_M_per_s is "per molar per second"; per_M_squared_per_s is "per molar squared per second"; GLU is "(GLU) glucose"; ENZ is "(ENZ) hexokinase"; ENG is "(ENG) hexokinase-glucose intermediate"; TP1 is "(TP1) adenosine triphosphate in store 1 (cytoplasm)"; ADP is "(ADP) adenosine diphosphate"; GLP is "(GLP) glucose 6-phosphate"; ETZ is "(ETZ) phosphofructokinase"; ETG is "(ETG) phosphofructokinase intermediate"; GPP is "(GPP) hexose diphosphate"; GAP is "(GAP) glyceraldehyde 3-phosphate"; DHA is "(DHA) dihydroxacetone phosphate"; DPN is "(DPN) extramitochondrial diphospyridine nucleotide"; DPH is "(DPH) extramitochondrial reduced diphospyridine nucleotide"; PID is "(PID) inorganic phosphate"; DGA is "(DGA) 1,3 diphosphoglycerate"; PGA is "(PGA) 3 phosphoglycerate"; PYR is "(PYR) pyruvate"; LAC is "(LAC) lactate"; DIN is "(DIN) intramitochondrial diphospyridine nucleotide"; DIH is "(DIH) intramitochondrial reduced diphospyridine nucleotide"; XI is "(XI) low energy intermediate in oxidative phosphorylation"; XSI is "(XSI) high energy intermediate in oxidative phosphorylation"; OXY is "(OXY) oxygen"; XSP is "(XSP) phosphorylated intermediate in oxidative phosphorylation"; TP2 is "(TP2) adenosine triphosphate in store 2 (mitochondria)"; DBP is "(DBP) dibromophenol"; PUE is "(PUE) enzyme concerned in ATP utilization"; PPP is "(PPP) enzyme intermediate concerned in ATP utilization"; AGP is "(AGP) alpha-glycerophosphate"; MOD is "(MOD) glyceraldehyde 3-phoshphate dehydrogenase-DPN complex"; MOB is "(MOB) acyl enzyme intermediate of glyceraldehyde 3-phoshphate dehydrogenase"; MOX is "(MOX) glyceraldehyde 3-phoshphate dehydrogenase"; e_1 is "addition of glucose"; e_2 is "addition of uncoupling agent"; GLU_0 is "relative GLU"; ENZ_0 is "relative ENZ"; ENG_0 is "relative ENG"; TP1_0 is "relative TP1"; ADP_0 is "relative ADP"; GLP_0 is "relative GLP"; ETZ_0 is "relative ETZ"; ETG_0 is "relative ETG"; GPP_0 is "relative GPP"; GAP_0 is "relative GAP"; DHA_0 is "relative DHA"; DPN_0 is "relative DPN"; DPH_0 is "relative DPH"; PID_0 is "relative PID"; DGA_0 is "relative DGA"; PGA_0 is "relative PGA"; PYR_0 is "relative PYR"; LAC_0 is "relative LAC"; DIN_0 is "relative DIN"; DIH_0 is "relative DIH"; XI_0 is "relative XI"; XSI_0 is "relative XSI"; OXY_0 is "relative OXY"; XSP_0 is "relative XSP"; TP2_0 is "relative TP2"; DBP_0 is "relative DBP"; PUE_0 is "relative PUE"; PPP_0 is "relative PPP"; AGP_0 is "relative AGP"; MOD_0 is "relative MOD"; MOB_0 is "relative MOB"; MOX_0 is "relative MOX"; r_1 is "reaction 1"; r_2 is "reaction 2"; r_3 is "reaction 3"; r_4 is "reaction 4"; r_5 is "reaction 5"; r_6 is "reaction 6"; r_7 is "reaction 7"; r_8 is "reaction 8"; r_9 is "reaction 9"; r_10 is "reaction 10"; r_11 is "reaction 11"; r_12 is "reaction 12"; r_13 is "reaction 13"; r_14 is "reaction 14"; r_15 is "reaction 15"; r_16 is "reaction 16"; r_17 is "reaction 17"; r_18 is "reaction 18"; r_19 is "reaction 19"; r_20 is "reaction 20"; r_21 is "reaction 21"; r_22 is "reaction 22"; end