// Created by libAntimony v2.8.0 model *Radulescu2008_NFkB_hierarchy_M_39_65_90() // Compartments and Species: compartment default, c1; species s22 in c1, s36 in c1, s65 in c1, s93 in c1, $s108 in c1, $s109 in default; species s110 in default, $s111 in default, $s112 in default, s113 in default; species s114 in default, s117 in default, $s118 in default, s119 in default; species $s120 in default, $s122 in default, s123 in default, s124 in default; species s126 in c1, s127 in default, s128 in default, $s129 in default; species s130 in default, $s131 in default, s132 in default, s133 in default; species $s134 in default, s150 in c1, $s153 in default, $s154 in default; species $s156 in default, $s157 in default, $s158 in c1, s160 in c1, s165 in c1; species s170 in c1, s173 in c1, s178 in default, s185 in c1, s188 in default; species s189 in default, s190 in default, s191 in default, s192 in c1, s193 in c1; species s194 in c1, s195 in c1, s196 in c1, s197 in c1, s198 in c1, s199 in c1; species s200 in c1, s201 in c1, s205 in c1, s206 in c1, s209 in c1, s212 in c1; species s213 in c1, s214 in c1, s215 in c1; // Reactions: re1: s22 + s198 => s199; kf32*s198*s22 - kr32*s199; re8: s199 + s195 => s200; kf64*s195*s199 - kr64*s200; re14: s195 + s206 => s214; kf56*s195*s206 - kr56*s214; re15: s93 + s212 => s213; kf57*s93*s212 - kr57*s213; re19: s195 + s198 => s196; kf63*s195*s198 - kr63*s196; re20: s196 + s93 => s197; kf65*s93*s196 - kr65*s197; re21: s195 + s205 => s212; kf55*s195*s205 - kr55*s212; re22: s200 + s93 => s201; kf66*s93*s200 - kr66*s201; re23: s93 + s214 => s215; kf58*s93*s214 - kr58*s215; re24: s65 + s205 => s206; kf48*s65*s205 - kr48*s206; re25: s197 => s198 + s192; kf67*s197 - kr67*s192*s198; re26: s201 => s199 + s192; kf68*s201 - kr68*s192*s199; re27: s215 => s206 + s192; kf60*s215 - kr60*s192*s206; re28: s213 => s205 + s192; kf59*s213 - kr59*s192*s205; re29: s193 + s36 => s194; kf41*s36*s193 - kr41*s194; re30: s160 => s165; k42*s193 + k43*s194; re31: s170 => s173; k33*s198 + k34*s199 + k69*s196 + k70*s200; re32: s209 => s185; k49*s205 + k50*s206 + k62*s214 + k61*s212; re33: s195 => $s108; k54*s195; re34: s173 => s113; k35*s173; re35: s110 => $s109; k38*s110; re36: s113 => $s112; k37*s113; re37: s113 => s110 + s113; k36*s113; re38: s110 => s114; k39*s110; re39: s114 => $s111; k40*s114; re40: s165 => s117; k44*s165; re41: s117 => $s118; k46*s117; re42: s119 => $s120; k47*s119; re43: s117 => s119 + s117; k45*s117; re44: s185 => s178; k51*s185; re45: s178 => s124; k27*s178; re46: s123 => $s122; k21*s123; re47: s178 => s123 + s178; k22*s178; re48: s126 => s127; k19 + k20*s195; re49: s133 => s132; k1*s133; re52: s188 => s190; k12*s188; re53: s133 => $s131; k2*s133; re56: s132 => $s134; k6*s132; re57: s191 => s132; k8*s191; re58: s132 + s188 => s189; k9*s132*s188; re59: s189 => s190 + s132; k10*s189; re60: s130 => $s129; k11*s130; re61: s127 => s128 + s127; k16*s127; re62: s114 + s119 => s190; kf52*s114*s119 - kr52*s190; re63: s132 => s130; k5*s132 + k4*s132*s128; re64: s150 => s133; k3; re65: s123 + s190 => s188; kf13*s190*s123 - kr13*s188; re66: s123 + s132 => s191; k7*s132*s123; re67: s190 => 5s195; kf15*s190 - kr15*s195; re68: 5s192 => s188; kf28*s192 - kr28*s188; re69: s195 + s93 => s192; kf14*s195*s93 - kr14*s192; re70: s127 => $s153; k17*s127; re71: s128 => $s154; k18*s128; re72: s123 => 5s93; kf23*s123 - kr23*s93; re74: s190 => $s156; k53*s190; re75: s188 => $s157; k71*s188; re76: s192 => $s158; k72*s192; // Events: signal: at 0 after time > 72000: k1 = 0.0025; // Species initializations: s22 = 0.000333333333333333/c1; s36 = 0.000333333333333333/c1; s65 = 0.000333333333333333/c1; s93 = 0; s108 = 0; s109 = 0; s110 = 0; s111 = 0; s112 = 0; s113 = 0; s114 = 0; s117 = 0; s118 = 0; s119 = 0; s120 = 0; s122 = 0; s123 = 0; s124 = 0; s126 = 0; s127 = 0; s128 = 0; s129 = 0; s130 = 0; s131 = 0; s132 = 0; s133 = 0; s134 = 0; s150 = 0; s153 = 0; s154 = 0; s156 = 0; s157 = 0; s158 = 0; s160 = 0; s165 = 0; s170 = 0; s173 = 0; s178 = 0; s185 = 0; s188 = 0; s189 = 0; s190 = 0; s191 = 0; s192 = 0; s193 = 6.66666666666667e-006/c1; s194 = 0; s195 = 0; s196 = 0; s197 = 0; s198 = 6.66666666666667e-006/c1; s199 = 0; s200 = 0; s201 = 0; s205 = 6.66666666666667e-006/c1; s206 = 0; s209 = 0; s212 = 0; s213 = 0; s214 = 0; s215 = 0; // Compartment initializations: default = 1; c1 = 1; // Variable initializations: k1 = 0; k2 = 0.000125; k3 = 1e-005; k4 = 0.1; k5 = 0.0015; k6 = 0.000125; k7 = 0.24; k8 = 0.1; k9 = 1.2; k10 = 0.1; k11 = 0.000125; k12 = 2e-005; kf13 = 0.5; kr13 = 0; kf14 = 0.5; kr14 = 0; kf15 = 0.0025; kr15 = 8e-005; k16 = 0.5; k17 = 0.0004; k18 = 0.0003; k20 = 5e-007; k19 = 0; k21 = 0.0001; k22 = 0.5; kf23 = 0.001; kr23 = 0.0005; k25 = 0; k27 = 0.0004; kf28 = 0.01; kr28 = 0; kf32 = 10; kr32 = 0.0001; k42 = 0.0005; k43 = 0.1; k33 = 0.0005; k34 = 0.1; k69 = 0.006; k70 = 0.06; k49 = 0.0005; k50 = 0.02; k61 = 0.06; k62 = 0.6; k35 = 0.01; k36 = 0.0041; k37 = 5e-005; k38 = 6e-005; k39 = 0.00013; k40 = 6.4e-005; kf41 = 10; kr41 = 0.0001; k44 = 0.016; k45 = 0.0053; k46 = 5e-005; k47 = 6.4e-005; kf48 = 10; kr48 = 0.0001; k51 = 0.025; kf52 = 0.003; kr52 = 0.001; k53 = 0.0002; k54 = 0.0002; kf55 = 0.62; kr55 = 0.00048; kf56 = 0.62; kr56 = 0.00048; kf57 = 18.4; kr57 = 0.055; kf58 = 18.4; kr58 = 0.055; kf59 = 0.0038; kr59 = 8e-013; kf60 = 0.0038; kr60 = 8e-013; kf63 = 0.62; kr63 = 0.00048; kf64 = 0.62; kr64 = 0.00048; kf65 = 18.4; kr65 = 0.055; kf66 = 18.4; kr66 = 0.055; kf67 = 0.0038; kr67 = 8e-013; kf68 = 0.0038; kr68 = 8e-013; k71 = 0.0002; k72 = 0.0002; // Other declarations: var k1; const default, c1, k2, k3, k4, k5, k6, k7, k8, k9, k10, k11, k12, kf13; const kr13, kf14, kr14, kf15, kr15, k16, k17, k18, k20, k19, k21, k22, kf23; const kr23, k25, k27, kf28, kr28, kf32, kr32, k42, k43, k33, k34, k69, k70; const k49, k50, k61, k62, k35, k36, k37, k38, k39, k40, kf41, kr41, k44; const k45, k46, k47, kf48, kr48, k51, kf52, kr52, k53, k54, kf55, kr55; const kf56, kr56, kf57, kr57, kf58, kr58, kf59, kr59, kf60, kr60, kf63; const kr63, kf64, kr64, kf65, kr65, kf66, kr66, kf67, kr67, kf68, kr68; const k71, k72; // Display Names: c1 is "nucleus"; s22 is "FTAx"; s36 is "FTAy"; s65 is "FTAz"; s93 is "IkB_alpha"; s108 is "csa17_degraded"; s109 is "sa4_degraded"; s110 is "p105"; s111 is "sa438_degraded"; s112 is "sa3_degraded"; s113 is "mRNAp105"; s114 is "p50"; s117 is "mRNAp65"; s118 is "sa8_degraded"; s119 is "p65"; s120 is "sa9_degraded"; s122 is "sa13_degraded"; s123 is "IkB_alpha"; s124 is "sa12_degraded"; s126 is "A20"; s127 is "mRNAA20"; s128 is "A20"; s129 is "sa444_degraded"; s130 is "IKKi"; s131 is "sa19_degraded"; s132 is "IKKa"; s133 is "IKKn"; s134 is "sa20_degraded"; s150 is "IKK"; s153 is "sa96_degraded"; s154 is "sa97_degraded"; s156 is "csa21_degraded"; s157 is "csa18_degraded"; s158 is "csa9_degraded"; s160 is "InactivePRaseonp65"; s165 is "ActivePRaseonp65"; s170 is "InactivePRaseonp105"; s173 is "ActivePRaseonp105"; s178 is "mRNAIKB_alpha"; s185 is "ActivePRaseonIkB_alpha"; s188 is "NFkB:IkB_alpha"; s189 is "NFkB:IKKa:Ikb_alpha"; s190 is "NFkB"; s191 is "IKKa:IKB_alpha"; s192 is "NFkB:IkB_alpha"; s193 is "Promp65:RNAP2"; s194 is "Promp65:RNAP2:FTAy"; s195 is "NFkB"; s196 is "Promp105:RNAP1:p50p65"; s197 is "Promp105:RNAP1:p50p65:IkBa"; s198 is "Promp105:RNAP"; s199 is "Promp105:RNAP:FTAX"; s200 is "Promp105:RNAP1:FTAx:p50p65"; s201 is "Promp105:RNAP1:FTAx:p50p65:IkBa"; s205 is "PromIkBa:RNAP3"; s206 is "PromIkBa:RNAP3:FTAz"; s209 is "InactivePRaseonIkB_alpha"; s212 is "PromIkBa:RNAP3:p50p65"; s213 is "PromIkBa:RNAP3:p50p65:IkBa"; s214 is "IkBa:RNAP3:FTAz:p50p65"; s215 is "PromIkBa:RNAP3:FTAz:p50p65:IkB_alpha"; end