// Created by libAntimony v2.8.0 model *MODEL8609366518() // Compartments and Species: compartment cyto, extra, cyto_mem; species AC_active_cyto_mem in cyto_mem, G_GDP_cyto in cyto, G_protein_cyto in cyto; species G_a_s_cyto in cyto, GRK_bg_cyto in cyto, iso_BAR_p_cyto_mem in cyto_mem; species PDE4_cyto in cyto, ATP_cyto in cyto, AC_PKA_cyto_mem in cyto_mem; species R2C2_cyto in cyto, PP_PDE_cyto in cyto, BAR_cyto_mem in cyto_mem; species BAR_G_cyto_mem in cyto_mem, iso_extra in extra, iso_BAR_cyto_mem in cyto_mem; species MAPK_active_cyto in cyto, MEK_cyto in cyto, MEK_active_cyto in cyto; species B_Raf_active_cyto in cyto, bg_cyto in cyto, B_Raf_cyto in cyto; species PKA_cyto in cyto, AC_cyto_mem in cyto_mem, AMP_cyto in cyto, GRK_cyto in cyto; species PP2A_cyto in cyto, MAPK_cyto in cyto, PTP_cyto in cyto, PTP_PKA_cyto in cyto; species c_R2C2_cyto in cyto, c2_R2C2_cyto in cyto, c3_R2C2_cyto in cyto; species iso_BAR_G_cyto_mem in cyto_mem, PDE_high_km_cyto in cyto, cAMP_cyto in cyto; species PTP_PP_cyto in cyto, PDE4_P_cyto in cyto; // Assignment Rules: Vmax_pde4_p_pde4_p := 20*0.00166112956810631*PDE4_P_cyto; Vmax_PPase_Raf := kcat_PPase_Raf*0.00166112956810631*PP2A_cyto; Vmax_PDE4_PDE4 := 8*0.00166112956810631*PDE4_cyto; Vmax_MEK_activates_MAPK := 0.15*0.00166112956810631*MEK_active_cyto; Vmax_PKA_activates_Raf := kcat_PKA_activates_Raf*0.00166112956810631*PKA_cyto; Vmax_AC_active_AC_active := 8.5*AC_active_cyto_mem; Vmax_highKM_PDE := 8*0.00166112956810631*PDE_high_km_cyto; Vmax_PKA_P_PTP := kcat_PKA_P_PTP*0.00166112956810631*PKA_cyto; Vmax_AC_basal_AC_basal := 0.2*AC_cyto_mem; Vmax_grk_GRK := 0.104*0.00166112956810631*GRK_cyto; Vmax_PKA_P_PDE := 10*0.00166112956810631*PKA_cyto; Vmax_Raf_activates_MEK := 0.105*0.00166112956810631*B_Raf_active_cyto; Vmax_PTP_PKA := kcat_PTP_PKA*0.00166112956810631*PTP_PKA_cyto; Vmax_PTP := kcat_PTP*0.00166112956810631*PTP_cyto; Vmax_PPase_MAPK := kcat_PPase_MAPK*0.00166112956810631*PP2A_cyto; Vmax_pp2a_4_pp2a_4 := 5*0.00166112956810631*PP_PDE_cyto; Vmax_pp_ptp := kcat_pp_ptp_pp_ptp*0.00166112956810631*PTP_PP_cyto; Vmax_GRK_bg_GRK_bg := 1.34*0.00166112956810631*GRK_bg_cyto; Vmax_PPase_mek := kcat_PPase_mek*0.00166112956810631*PP2A_cyto; // Reactions: activate_Gs: iso_BAR_G_cyto_mem -> iso_BAR_cyto_mem + bg_cyto + G_a_s_cyto; (activate_Gs_Kf_activate_Gs*iso_BAR_G_cyto_mem - activate_Gs_Kr_activate_Gs*iso_BAR_cyto_mem*0.00166112956810631*bg_cyto*0.00166112956810631*G_a_s_cyto)*cyto_mem; pde4_p: cAMP_cyto -> AMP_cyto; Vmax_pde4_p_pde4_p*0.00166112956810631*cAMP_cyto*(1/(pde4_p_Km_pde4_p + 0.00166112956810631*cAMP_cyto))*cyto*1*(1/KMOLE); PPase_Raf: B_Raf_active_cyto -> B_Raf_cyto; Vmax_PPase_Raf*0.00166112956810631*B_Raf_active_cyto*(1/(PPase_Raf_Km + 0.00166112956810631*B_Raf_active_cyto))*cyto*1*(1/KMOLE); iso_binds_BAR: BAR_cyto_mem + iso_extra -> iso_BAR_cyto_mem; (iso_binds_BAR_Kf*BAR_cyto_mem*0.00166112956810631*iso_extra + -(iso_binds_BAR_Kr*iso_BAR_cyto_mem))*cyto_mem; PDE4: cAMP_cyto -> AMP_cyto; Vmax_PDE4_PDE4*0.00166112956810631*cAMP_cyto*(1/(PDE4_Km_PDE4 + 0.00166112956810631*cAMP_cyto))*cyto*1*(1/KMOLE); bg_binds_GRK: GRK_cyto + bg_cyto -> GRK_bg_cyto; (bg_binds_GRK_Kf_bg_binds_GRK*0.00166112956810631*GRK_cyto*0.00166112956810631*bg_cyto + -(bg_binds_GRK_Kr_bg_binds_GRK*0.00166112956810631*GRK_bg_cyto))*cyto*1*(1/KMOLE); MEK_activates_MAPK: MAPK_cyto -> MAPK_active_cyto; Vmax_MEK_activates_MAPK*0.00166112956810631*MAPK_cyto*(1/(MEK_activates_MAPK_Km + 0.00166112956810631*MAPK_cyto))*cyto*1*(1/KMOLE); PKA_activates_Raf: B_Raf_cyto -> B_Raf_active_cyto; Vmax_PKA_activates_Raf*0.00166112956810631*B_Raf_cyto*(1/(PKA_activates_Raf_Km + 0.00166112956810631*B_Raf_cyto))*cyto*1*(1/KMOLE); AC_active: ATP_cyto -> cAMP_cyto; Vmax_AC_active_AC_active*0.00166112956810631*ATP_cyto*(1/(AC_active_Km_AC_active + 0.00166112956810631*ATP_cyto))*cyto_mem; GTPase: G_a_s_cyto -> G_GDP_cyto; (GTPase_Kf_GTPase*0.00166112956810631*G_a_s_cyto + -(GTPase_Kr_GTPase*0.00166112956810631*G_GDP_cyto))*cyto*1*(1/KMOLE); trimer: bg_cyto + G_GDP_cyto -> G_protein_cyto; (trimer_Kf_trimer*0.00166112956810631*bg_cyto*0.00166112956810631*G_GDP_cyto + -(trimer_Kr_trimer*0.00166112956810631*G_protein_cyto))*cyto*1*(1/KMOLE); G_binds_iso_BAR: iso_BAR_cyto_mem + G_protein_cyto -> iso_BAR_G_cyto_mem; (G_binds_iso_BAR_Kf_G_binds_iso_BAR*iso_BAR_cyto_mem*0.00166112956810631*G_protein_cyto + -(G_binds_iso_BAR_Kr_G_binds_iso_BAR*iso_BAR_G_cyto_mem))*cyto_mem; A2: c3_R2C2_cyto + cAMP_cyto -> PKA_cyto; (A2_Kf*0.00166112956810631*c3_R2C2_cyto*0.00166112956810631*cAMP_cyto + -(A2_Kr*0.00166112956810631*PKA_cyto))*cyto*1*(1/KMOLE); highKM_PDE: cAMP_cyto -> AMP_cyto; Vmax_highKM_PDE*0.00166112956810631*cAMP_cyto*(1/(highKM_PDE_Km + 0.00166112956810631*cAMP_cyto))*cyto*1*(1/KMOLE); PKA_P_PTP: PTP_cyto -> PTP_PKA_cyto; Vmax_PKA_P_PTP*0.00166112956810631*PTP_cyto*(1/(PKA_P_PTP_Km + 0.00166112956810631*PTP_cyto))*cyto*1*(1/KMOLE); AC_activation: G_a_s_cyto + AC_cyto_mem -> AC_active_cyto_mem; (AC_activation_Kf_AC_activation*0.00166112956810631*G_a_s_cyto*AC_cyto_mem + -(AC_activation_Kr_AC_activation*AC_active_cyto_mem))*cyto_mem; AC_basal: ATP_cyto -> cAMP_cyto; Vmax_AC_basal_AC_basal*0.00166112956810631*ATP_cyto*(1/(AC_basal_Km_AC_basal + 0.00166112956810631*ATP_cyto))*cyto_mem; B1: R2C2_cyto + cAMP_cyto -> c_R2C2_cyto; (B1_Kf*0.00166112956810631*R2C2_cyto*0.00166112956810631*cAMP_cyto + -(B1_Kr*0.00166112956810631*c_R2C2_cyto))*cyto*1*(1/KMOLE); GRK: iso_BAR_cyto_mem -> iso_BAR_p_cyto_mem; Vmax_grk_GRK*iso_BAR_cyto_mem*(1/(GRK_Km_grk + iso_BAR_cyto_mem))*cyto_mem; PKA_P_PDE: PDE4_cyto -> PDE4_P_cyto; Vmax_PKA_P_PDE*0.00166112956810631*PDE4_cyto*(1/(PKA_P_PDE_Km + 0.00166112956810631*PDE4_cyto))*cyto*1*(1/KMOLE); Raf_activates_MEK: MEK_cyto -> MEK_active_cyto; Vmax_Raf_activates_MEK*0.00166112956810631*MEK_cyto*(1/(Raf_activates_MEK_Km + 0.00166112956810631*MEK_cyto))*cyto*1*(1/KMOLE); PTP_PKA: MAPK_active_cyto -> MAPK_cyto; Vmax_PTP_PKA*0.00166112956810631*MAPK_active_cyto*(1/(PTP_PKA_Km + 0.00166112956810631*MAPK_active_cyto))*cyto*1*(1/KMOLE); B2: c_R2C2_cyto + cAMP_cyto -> c2_R2C2_cyto; (B2_Kf*0.00166112956810631*c_R2C2_cyto*0.00166112956810631*cAMP_cyto + -(B2_Kr*0.00166112956810631*c2_R2C2_cyto))*cyto*1*(1/KMOLE); PTP: MAPK_active_cyto -> MAPK_cyto; Vmax_PTP*0.00166112956810631*MAPK_active_cyto*(1/(PTP_Km + 0.00166112956810631*MAPK_active_cyto))*cyto*1*(1/KMOLE); iso_binds_BAR_g: iso_extra + BAR_G_cyto_mem -> iso_BAR_G_cyto_mem; (iso_binds_BAR_g_Kf*0.00166112956810631*iso_extra*BAR_G_cyto_mem + -(iso_binds_BAR_g_Kr*iso_BAR_G_cyto_mem))*cyto_mem; PPase_MAPK: MAPK_active_cyto -> MAPK_cyto; Vmax_PPase_MAPK*0.00166112956810631*MAPK_active_cyto*(1/(PPase_MAPK_Km + 0.00166112956810631*MAPK_active_cyto))*cyto*1*(1/KMOLE); pp2a_4: PDE4_P_cyto -> PDE4_cyto; Vmax_pp2a_4_pp2a_4*0.00166112956810631*PDE4_P_cyto*(1/(pp2a_4_Km_pp2a_4 + 0.00166112956810631*PDE4_P_cyto))*cyto*1*(1/KMOLE); pp_ptp: PTP_PKA_cyto -> PTP_cyto; Vmax_pp_ptp*0.00166112956810631*PTP_PKA_cyto*(1/(pp_ptp_Km + 0.00166112956810631*PTP_PKA_cyto))*cyto*1*(1/KMOLE); GRK_bg: iso_BAR_cyto_mem -> iso_BAR_p_cyto_mem; Vmax_GRK_bg_GRK_bg*iso_BAR_cyto_mem*(1/(GRK_bg_Km_GRK_bg + iso_BAR_cyto_mem))*cyto_mem; G_binds_BAR: BAR_cyto_mem + G_protein_cyto -> BAR_G_cyto_mem; (G_binds_BAR_Kf_G_binds_BAR*BAR_cyto_mem*0.00166112956810631*G_protein_cyto + -(G_binds_BAR_Kr_G_binds_BAR*BAR_G_cyto_mem))*cyto_mem; PPase_mek: MEK_active_cyto -> MEK_cyto; Vmax_PPase_mek*0.00166112956810631*MEK_active_cyto*(1/(PPase_mek_Km + 0.00166112956810631*MEK_active_cyto))*cyto*1*(1/KMOLE); A1: c2_R2C2_cyto + cAMP_cyto -> c3_R2C2_cyto; (A1_Kf*0.00166112956810631*c2_R2C2_cyto*0.00166112956810631*cAMP_cyto + -(A1_Kr*0.00166112956810631*c3_R2C2_cyto))*cyto*1*(1/KMOLE); // Species initializations: AC_active_cyto_mem = 0; AC_active_cyto_mem has molecules_um_2; G_GDP_cyto = 0; G_GDP_cyto has molecule_per_volume; G_protein_cyto = 2167.2; G_protein_cyto has molecule_per_volume; G_a_s_cyto = 0; G_a_s_cyto has molecule_per_volume; GRK_bg_cyto = 0; GRK_bg_cyto has molecule_per_volume; iso_BAR_p_cyto_mem = 0; iso_BAR_p_cyto_mem has molecules_um_2; PDE4_cyto = 240.8; PDE4_cyto has molecule_per_volume; ATP_cyto = 3010000; ATP_cyto has molecule_per_volume; AC_PKA_cyto_mem = 0; AC_PKA_cyto_mem has molecules_um_2; R2C2_cyto = 120.4; R2C2_cyto has molecule_per_volume; PP_PDE_cyto = 120.4; PP_PDE_cyto has molecule_per_volume; BAR_cyto_mem = 94; BAR_cyto_mem has molecules_um_2; BAR_G_cyto_mem = 0; BAR_G_cyto_mem has molecules_um_2; iso_extra = 6020; iso_extra has molecule_per_volume; iso_BAR_cyto_mem = 0; iso_BAR_cyto_mem has molecules_um_2; MAPK_active_cyto = 0; MAPK_active_cyto has molecule_per_volume; MEK_cyto = 108.36; MEK_cyto has molecule_per_volume; MEK_active_cyto = 0; MEK_active_cyto has molecule_per_volume; B_Raf_active_cyto = 0; B_Raf_active_cyto has molecule_per_volume; bg_cyto = 0; bg_cyto has molecule_per_volume; B_Raf_cyto = 120.4; B_Raf_cyto has molecule_per_volume; PKA_cyto = 0; PKA_cyto has molecule_per_volume; AC_cyto_mem = 300; AC_cyto_mem has molecules_um_2; AMP_cyto = 3010000; AMP_cyto has molecule_per_volume; GRK_cyto = 0.602; GRK_cyto has molecule_per_volume; PP2A_cyto = 60.2; PP2A_cyto has molecule_per_volume; MAPK_cyto = 216.72; MAPK_cyto has molecule_per_volume; PTP_cyto = 120.4; PTP_cyto has molecule_per_volume; PTP_PKA_cyto = 0; PTP_PKA_cyto has molecule_per_volume; c_R2C2_cyto = 0; c_R2C2_cyto has molecule_per_volume; c2_R2C2_cyto = 0; c2_R2C2_cyto has molecule_per_volume; c3_R2C2_cyto = 0; c3_R2C2_cyto has molecule_per_volume; iso_BAR_G_cyto_mem = 0; iso_BAR_G_cyto_mem has molecules_um_2; PDE_high_km_cyto = 301; PDE_high_km_cyto has molecule_per_volume; cAMP_cyto = 0; cAMP_cyto has molecule_per_volume; PTP_PP_cyto = 60.2; PTP_PP_cyto has molecule_per_volume; PDE4_P_cyto = 0; PDE4_P_cyto has molecule_per_volume; // Compartment initializations: cyto = 1; extra = 0.111111111111111; cyto_mem = 0.2; cyto_mem has um2; // Variable initializations: KMOLE = 0.00166112956810631; KMOLE has uM_um3_molecules_1; Vmax_pde4_p_pde4_p has uM_s_1; kcat_PPase_Raf = 5; kcat_PPase_Raf has s_1; Vmax_PPase_Raf has uM_s_1; Vmax_PDE4_PDE4 has uM_s_1; Vmax_MEK_activates_MAPK has uM_s_1; kcat_PKA_activates_Raf = 10; kcat_PKA_activates_Raf has s_1; Vmax_PKA_activates_Raf has uM_s_1; Vmax_AC_active_AC_active has molecules_um_2_s_1; Vmax_highKM_PDE has uM_s_1; kcat_PKA_P_PTP = 0.2; kcat_PKA_P_PTP has s_1; Vmax_PKA_P_PTP has uM_s_1; Vmax_AC_basal_AC_basal has molecules_um_2_s_1; Vmax_grk_GRK has molecules_um_2_s_1; Vmax_PKA_P_PDE has uM_s_1; Vmax_Raf_activates_MEK has uM_s_1; kcat_PTP_PKA = 0.1; kcat_PTP_PKA has s_1; Vmax_PTP_PKA has uM_s_1; kcat_PTP = 1.06; kcat_PTP has s_1; Vmax_PTP has uM_s_1; kcat_PPase_MAPK = 0.636; kcat_PPase_MAPK has s_1; Vmax_PPase_MAPK has uM_s_1; Vmax_pp2a_4_pp2a_4 has uM_s_1; kcat_pp_ptp_pp_ptp = 5; kcat_pp_ptp_pp_ptp has s_1; Vmax_pp_ptp has uM_s_1; Vmax_GRK_bg_GRK_bg has molecules_um_2_s_1; kcat_PPase_mek = 5; kcat_PPase_mek has s_1; Vmax_PPase_mek has uM_s_1; activate_Gs_I = 0; activate_Gs_I has pA_um_2; activate_Gs_Kf_activate_Gs = 0.025; activate_Gs_Kf_activate_Gs has s_1; activate_Gs_Kr_activate_Gs = 0; activate_Gs_Kr_activate_Gs has _one_000000_0_m6_mol_2_s_1; pde4_p_Km_pde4_p = 1.3; pde4_p_Km_pde4_p has uM; PPase_Raf_Km = 15.7; PPase_Raf_Km has uM; iso_binds_BAR_I = 0; iso_binds_BAR_I has pA_um_2; iso_binds_BAR_Kf = 1; iso_binds_BAR_Kf has uM_1_s_1; iso_binds_BAR_Kr = 0.2; iso_binds_BAR_Kr has s_1; PDE4_Km_PDE4 = 1.3; PDE4_Km_PDE4 has uM; bg_binds_GRK_Kf_bg_binds_GRK = 1; bg_binds_GRK_Kf_bg_binds_GRK has uM_1_s_1; bg_binds_GRK_Kr_bg_binds_GRK = 0.25; bg_binds_GRK_Kr_bg_binds_GRK has s_1; MEK_activates_MAPK_Km = 0.046296; MEK_activates_MAPK_Km has uM; PKA_activates_Raf_Km = 0.5; PKA_activates_Raf_Km has uM; AC_active_I = 0; AC_active_I has pA_um_2; AC_active_Km_AC_active = 32; AC_active_Km_AC_active has uM; GTPase_Kf_GTPase = 0.06667; GTPase_Kf_GTPase has s_1; GTPase_Kr_GTPase = 0; GTPase_Kr_GTPase has s_1; trimer_Kf_trimer = 6; trimer_Kf_trimer has uM_1_s_1; trimer_Kr_trimer = 0; trimer_Kr_trimer has s_1; G_binds_iso_BAR_I = 0; G_binds_iso_BAR_I has pA_um_2; G_binds_iso_BAR_Kf_G_binds_iso_BAR = 10; G_binds_iso_BAR_Kf_G_binds_iso_BAR has uM_1_s_1; G_binds_iso_BAR_Kr_G_binds_iso_BAR = 0.1; G_binds_iso_BAR_Kr_G_binds_iso_BAR has s_1; A2_Kf = 8.35; A2_Kf has uM_1_s_1; A2_Kr = 0.0167; A2_Kr has s_1; highKM_PDE_Km = 15; highKM_PDE_Km has uM; PKA_P_PTP_Km = 0.1; PKA_P_PTP_Km has uM; AC_activation_I = 0; AC_activation_I has pA_um_2; AC_activation_Kf_AC_activation = 500; AC_activation_Kf_AC_activation has uM_1_s_1; AC_activation_Kr_AC_activation = 1; AC_activation_Kr_AC_activation has s_1; AC_basal_I = 0; AC_basal_I has pA_um_2; AC_basal_Km_AC_basal = 1030; AC_basal_Km_AC_basal has uM; B1_Kf = 0.0059; B1_Kf has uM_1_s_1; B1_Kr = 0.00028; B1_Kr has s_1; GRK_I = 0; GRK_I has pA_um_2; GRK_Km_grk = 15; GRK_Km_grk has molecules_um_2; PKA_P_PDE_Km = 0.5; PKA_P_PDE_Km has uM; Raf_activates_MEK_Km = 0.15909; Raf_activates_MEK_Km has uM; PTP_PKA_Km = 9; PTP_PKA_Km has uM; B2_Kf = 0.0059; B2_Kf has uM_1_s_1; B2_Kr = 0.00028; B2_Kr has s_1; PTP_Km = 0.46; PTP_Km has uM; iso_binds_BAR_g_I = 0; iso_binds_BAR_g_I has pA_um_2; iso_binds_BAR_g_Kf = 1; iso_binds_BAR_g_Kf has uM_1_s_1; iso_binds_BAR_g_Kr = 0.062; iso_binds_BAR_g_Kr has s_1; PPase_MAPK_Km = 0.77; PPase_MAPK_Km has uM; pp2a_4_Km_pp2a_4 = 8; pp2a_4_Km_pp2a_4 has uM; pp_ptp_Km = 6; pp_ptp_Km has uM; GRK_bg_I = 0; GRK_bg_I has pA_um_2; GRK_bg_Km_GRK_bg = 4; GRK_bg_Km_GRK_bg has molecules_um_2; G_binds_BAR_I = 0; G_binds_BAR_I has pA_um_2; G_binds_BAR_Kf_G_binds_BAR = 0.3; G_binds_BAR_Kf_G_binds_BAR has uM_1_s_1; G_binds_BAR_Kr_G_binds_BAR = 0.1; G_binds_BAR_Kr_G_binds_BAR has s_1; PPase_mek_Km = 15.7; PPase_mek_Km has uM; A1_Kf = 8.35; A1_Kf has uM_1_s_1; A1_Kr = 0.0167; A1_Kr has s_1; // Other declarations: var Vmax_pde4_p_pde4_p, Vmax_PPase_Raf, Vmax_PDE4_PDE4, Vmax_MEK_activates_MAPK; var Vmax_PKA_activates_Raf, Vmax_AC_active_AC_active, Vmax_highKM_PDE, Vmax_PKA_P_PTP; var Vmax_AC_basal_AC_basal, Vmax_grk_GRK, Vmax_PKA_P_PDE, Vmax_Raf_activates_MEK; var Vmax_PTP_PKA, Vmax_PTP, Vmax_PPase_MAPK, Vmax_pp2a_4_pp2a_4, Vmax_pp_ptp; var Vmax_GRK_bg_GRK_bg, Vmax_PPase_mek; const cyto, extra, cyto_mem, KMOLE, kcat_PPase_Raf, kcat_PKA_activates_Raf; const kcat_PKA_P_PTP, kcat_PTP_PKA, kcat_PTP, kcat_PPase_MAPK, kcat_pp_ptp_pp_ptp; const kcat_PPase_mek; // Unit definitions: unit substance = item; unit volume = (1e-006 metre)^3; unit area = (1e-6 metre)^2; unit molecule = item; unit um2 = (1e-6 metre)^2; unit uM_um3_molecules_1 = 1e-6 mole / (item * litre * (1e-6 metre)^3); unit molecules_um_2_s_1 = item / ((1e-6 metre)^2 * second); unit pA_um_2 = dimensionless * ampere / metre^2; unit s_1 = 1 / second; unit _one_000000_0_m6_mol_2_s_1 = 1e+006 dimensionless * metre^6 / (mole^2 * second); unit uM_s_1 = 0.001 dimensionless * mole / (metre^3 * second); unit uM = 0.001 dimensionless * mole / metre^3; unit uM_1_s_1 = 1000 dimensionless * metre^3 / (mole * second); unit molecules_um_2 = item / (1e-6 metre)^2; unit molecule_per_volume = item / (1e-006 metre)^3; end