// Created by libAntimony v2.8.0 model *BIOMD0000000145() // Compartments and Species: compartment Cytosol, ER; species Galpha_GTP in Cytosol, APLC in Cytosol, IP3 in Cytosol, Ca_ER in ER; species Ca_Cyt in Cytosol, $PLC in Cytosol, $DG in Cytosol; // Assignment Rules: PLC := Cplc_total - APLC; DG := IP3; Raplc := APLC/(Kp + APLC); Rpkc := (DG/(Kd + DG)*Ca_Cyt)/(Kr + Ca_Cyt); Rgalpha_gtp := Galpha_GTP^n/(Kg^n + Galpha_GTP^n); Rdg := DG^m/(Kd^m + DG^m); Rip3 := IP3^3/(Ks^3 + IP3^3); Rcyt1 := Ca_Cyt/(Kc1 + Ca_Cyt); Rcyt2 := Ca_Cyt/(Kc2 + Ca_Cyt); Rer := Ca_ER^w/(Ker^w + Ca_ER^w); // Reactions: R1: => Galpha_GTP; Cytosol*k0; R2: => Galpha_GTP; Cytosol*k1*Galpha_GTP; R3: Galpha_GTP => ; Cytosol*k2*Raplc*Galpha_GTP; R4: Galpha_GTP => ; Cytosol*k3*Rpkc*Galpha_GTP; R5: => APLC; Cytosol*k4*Rgalpha_gtp*Rdg*PLC; R6: APLC => ; Cytosol*k5*APLC; R7: => IP3; Cytosol*k6*APLC; R8: IP3 => ; Cytosol*k7*IP3; R9: 0.001Ca_ER -> 0.01Ca_Cyt; ER*(k8*Rip3*Rer - k9*Rcyt1); R10: 0.05Ca_Cyt => ; Cytosol*k10*Rcyt2; R11: => 0.05Ca_Cyt; Cytosol*k11; // Species initializations: Galpha_GTP = 1; APLC = 9; IP3 = 1; Ca_ER = 1000; Ca_Cyt = 200; // Compartment initializations: Cytosol = 1; ER = 1; // Variable initializations: Cplc_total = 10; Kp = 4; Kd = 10; Kr = 200; n = 4; Kg = 25; m = 2; Ks = 25; Kc1 = 1000; Kc2 = 2000; w = 3; Ker = 75; k0 = 0.1; k1 = 3.4; k2 = 4; k3 = 4.5; k4 = 1.2; k5 = 0.12; k6 = 14; k7 = 2; k8 = 10500; k9 = 600; k10 = 3000; k11 = 260; // Other declarations: var Raplc, Rpkc, Rgalpha_gtp, Rdg, Rip3, Rcyt1, Rcyt2, Rer; const Cytosol, ER, Cplc_total, Kp, Kd, Kr, n, Kg, m, Ks, Kc1, Kc2, w, Ker; const k0, k1, k2, k3, k4, k5, k6, k7, k8, k9, k10, k11; // Unit definitions: unit substance = 1e-9 mole; // Display Names: substance is "nano mole"; Ca_ER is "Calcium"; Ca_Cyt is "Calcium"; DG is "Diacylglycerol"; end