// Created by libAntimony v2.8.0 model *model_0000001() // Compartments and Species: compartment cell; species c in cell, cer in cell, cAMP in cell; // Assignment Rules: ninf := 1/(1 + exp((vn - V)/sn)); minf := 1/(1 + exp((vm - V)/sm)); hinf := 1/(1 + exp((vh - V)/sh)); ica := gca*minf*(V - vca); igirk := girk*h*(V - vk); ik := gk*n*(V - vk); ainf := 1/(1 + dact/c); hinfer := 1/(1 + c/dinh); jerp := kserca*c; binf := IP3/(IP3 + dip3); o := ainf^3*binf^3*hinfer^3; jerleak := perl*(cer - c); jerip3 := o*(cer - c); jertot := (jerleak + jerip3) - jerp; jmemtot := -(alpha*ica + kc*c); perl_inf := (inh*cAMP*c^4)/(ki^4 + c^4); // Rate Rules: V' = (-ica - ik - igirk)/cm; h' = (hinf - h)/tauh; n' = (lambda*(ninf - n))/taun; inh' = ETswitch*((0.2 - inh)/taudir); // Reactions: reaction_0000001: => c; cell*f*(jertot + jmemtot); reaction_0000002: => cer; -fer*sigmav*jertot*cell; reaction_000003: => cAMP; cell*ETswitch*((cAMPlow - cAMP)/taudir); // Events: event_0000001: at time > 60000: ETswitch = 1, girk = 3000, IP3 = 0.3; // Species initializations: c = 0.3; cer = 260; cAMP = 1; // Compartment initializations: cell = 1; // Variable initializations: IP3 = 0; girk = 1000; ETswitch = 0; vh = -20; sh = 70; tauh = 20; kserca = 0.4; sigmav = 10; kc = 0.15; vn = -16; vk = -75; taun = 20; gk = 3500; sn = 5; vca = 25; gca = 2000; vm = -20; sm = 12; lambda = 1.25; cm = 5300; f = 0.01; fer = 0.01; alpha = 4.5e-006; perl = 0.0005; dact = 0.35; dip3 = 0.5; dinh = 0.4; V = -60; h = 0; n = 0; ki = 0.5; inh = 1; taudir = 20000; cAMPlow = 0.2; // Other declarations: var IP3, girk, ETswitch, ninf, V, minf, hinf, ica, igirk, h, ik, n, ainf; var hinfer, jerp, binf, o, jerleak, jerip3, jertot, jmemtot, perl_inf, inh; const cell, vh, sh, tauh, kserca, sigmav, kc, vn, vk, taun, gk, sn, vca; const gca, vm, sm, lambda, cm, f, fer, alpha, perl, dact, dip3, dinh, ki; const taudir, cAMPlow; // Unit definitions: unit ms = 1e-3 second; // Display Names: ms is "millisecond"; c is "cytosolic calcium concentration"; cer is "ER calcium concentration"; event_0000001 is "ET-1 switch"; V is "voltage"; n is "delayed rectifier activation"; inh is "variable for direct inhibition of secretion"; end