// Created by libAntimony v2.8.0 model *Model_1() // Compartments and Species: compartment cell; species H in cell, HR in cell, R in cell, HRRH in cell, E in cell, GQ in cell; species IP3 in cell, $CHO in cell; // Assignment Rules: CHO := (0.001*alpha*IP3*(0.3 + 0.3*beta*time*exp(1 - beta*time)))/(1 + 0.001*alpha*IP3); // Reactions: reaction_0: H + R -> HR; cell*(reaction_0_k1*H*R - reaction_0_k2*HR); reaction_1: 2HR -> HRRH; cell*(reaction_1_k1*HR^2 - reaction_1_k2*HRRH); reaction_2: HRRH + GQ -> E; cell*(reaction_2_k1*HRRH*GQ - reaction_2_k2*E); reaction_3: IP3 => ; cell*reaction_3_k1*IP3; reaction_4: => IP3; cell*reaction_4_k*E; // Events: RemovalH: at time > 5: H = 0; // Species initializations: H = 1; HR = 0; R = 0.01; HRRH = 0; E = 0; GQ = 0.1; IP3 = 0; // Compartment initializations: cell = 1; // Variable initializations: alpha = 2; alpha has substance; beta = 4; beta has unitDefinition_3; reaction_0_k1 = 2.5; reaction_0_k2 = 5; reaction_1_k1 = 2500; reaction_1_k2 = 5; reaction_2_k1 = 4000; reaction_2_k2 = 200; reaction_3_k1 = 10; reaction_4_k = 20000000; // Other declarations: const cell, alpha, beta; // Unit definitions: unit time_unit = 60 second; unit substance = 1e-9 mole; unit unitDefinition_3 = 1 / 60 second; // Display Names: unitDefinition_3 is "unit for beta"; RemovalH is "removal of hormone"; reaction_0 is "H binding to R"; reaction_1 is "HR forming HRRH"; reaction_2 is "G protein react with dimer producing E"; reaction_3 is "IP3 converted into inactive metabolites"; reaction_4 is "Production of IP3"; end