// Created by libAntimony v2.8.0 model *Sneyd2002_dynamic_model_of_IP3_Receptor() // Compartments and Species: compartment compartment_; species R in compartment_, O in compartment_, I1 in compartment_, S in compartment_; species A in compartment_, I2 in compartment_; // Assignment Rules: open_probability := (0.1*O + 0.9*A)^4; Phi1 := ((k1*L1 + l2)*c)/(L1 + c*(1 + L1/L3)); Phi2 := (k2*L3 + l4*c)/(L3 + c*(1 + L3/L1)); Phi_minus2 := (kminus2 + lminus4*c)/(1 + c/L5); Phi3 := (k3*L5)/(L5 + c); Phi4 := ((k4*L5 + l6)*c)/(L5 + c); Phi_minus4 := (L1*(kminus4 + lminus6))/(L1 + c); Phi5 := ((k1*L1 + l2)*c)/(L1 + c); // Reactions: v1: R -> O; compartment_*(Phi2*v1_IP3*R - Phi_minus2*O); v2: R -> I1; compartment_*(Phi1*R - (v2_kminus1 + v2_lminus2)*I1); v3: O -> S; compartment_*(Phi3*O - v3_kminus3*S); v4: O -> A; compartment_*(Phi4*O - Phi_minus4*A); v5: A -> I2; compartment_*(Phi5*A - (v5_kminus1 + v5_lminus2)*I2); // Species initializations: R = 1; O = 0; I1 = 0; S = 0; A = 0; I2 = 0; // Compartment initializations: compartment_ = 1; // Variable initializations: k1 = 0.64; L1 = 0.12; l2 = 1.7; c = 10; L3 = 0.025; lminus2 = 0.8; k2 = 37.4; l4 = 1.7; kminus2 = 1.4; lminus4 = 2.5; L5 = 54.7; kminus1 = 0.04; kminus3 = 29.8; k3 = 0.11; k4 = 4; l6 = 4707; kminus4 = 0.54; lminus6 = 11.4; IP3 = 10; v1_IP3 = 10; v2_kminus1 = 0.04; v2_lminus2 = 0.8; v3_kminus3 = 29.8; v5_kminus1 = 0.04; v5_lminus2 = 0.8; // Other declarations: var open_probability, Phi1, Phi2, Phi_minus2, Phi3, Phi4, Phi_minus4, Phi5; const compartment_, k1, L1, l2, c, L3, lminus2, k2, l4, kminus2, lminus4; const L5, kminus1, kminus3, k3, k4, l6, kminus4, lminus6, IP3; // Unit definitions: unit substance = 1e-6 mole; // Display Names: substance is "micromole"; R is "Receptor"; O is "Open State"; I1 is "Inactivated State 1"; S is "Shut State"; A is "Activated State"; I2 is "Inactivated State 2"; v1 is "Receptor-Open state transition"; v2 is "Receptor-Inactivated state 1 transition"; v3 is "Open-Shut state transition"; v4 is "Open-Activated state transition"; v5 is "Activated-Inactivated state 2 transition"; end