// Created by libAntimony v2.8.0 model *Ferreira_CML_generation() // Compartments and Species: compartment compartment_; species Glucose in compartment_, Lysine in compartment_, Schiff in compartment_; species Amadori in compartment_, Glyoxal in compartment_, CML in compartment_; // Assignment Rules: Fraction_Amadori := Amadori/0.0034; Fraction_CML := CML/0.0034; // Reactions: v1a: Lysine + Glucose => Schiff; compartment_*v1a_p1*v1a_k1a*Glucose*Lysine; v1b: Schiff => Lysine + Glucose; compartment_*v1b_k1b*Schiff; v2a: Schiff => Amadori; compartment_*v2a_p2*v2a_k2a*Schiff; v2b: Amadori => Schiff; compartment_*v2b_p2*v2b_k2b*Amadori; v3: Glucose => Glyoxal; compartment_*v3_ox*v3_p3*v3_k3*(Glucose/0.25)^0.36; v4: Amadori => CML; compartment_*v4_ox*v4_p4*v4_k4*Amadori; v5: Lysine + Glyoxal => CML; compartment_*v5_ox*v5_p5*v5_k5*Glyoxal*Lysine; v5b: Glyoxal => ; compartment_*v5b_k5b*Glyoxal; v6: Schiff => CML; compartment_*v6_ox*v6_p6*v6_k3*(Schiff/0.25)^0.36; v7a: => Lysine; compartment_*0.05*v7a_ox*v7a_p7*v7a_k3*(Schiff/0.25)^0.36; v7b: => Glyoxal; compartment_*0.005*v7b_ox*v7b_p7*v7b_k3*(Schiff/0.25)^0.36; v7c: Schiff => ; compartment_*v7c_ox*v7c_p7*v7c_k3*(Schiff/0.25)^0.36; // Species initializations: Glucose = 0.25; Lysine = 0.0034; Schiff = 0; Amadori = 0; Glyoxal = 0; CML = 0; // Compartment initializations: compartment_ = 1; // Variable initializations: v1a_p1 = 0.115; v1a_k1a = 0.09; v1b_k1b = 0.36; v2a_p2 = 0.75; v2a_k2a = 0.033; v2b_p2 = 0.75; v2b_k2b = 0.0012; v3_ox = 1; v3_p3 = 1; v3_k3 = 7.92e-007; v4_ox = 1; v4_p4 = 1; v4_k4 = 8.6e-005; v5_ox = 1; v5_p5 = 1; v5_k5 = 0.019; v5b_k5b = 0.0017; v6_ox = 1; v6_p6 = 2.7; v6_k3 = 7.92e-007; v7a_ox = 1; v7a_p7 = 60; v7a_k3 = 7.92e-007; v7b_ox = 1; v7b_p7 = 60; v7b_k3 = 7.92e-007; v7c_ox = 1; v7c_p7 = 60; v7c_k3 = 7.92e-007; // Other declarations: var Fraction_Amadori, Fraction_CML; const compartment_; // Unit definitions: unit time_unit = 3600 second; // Display Names: time_unit is "hour (default)"; end