// Created by libAntimony v2.8.0 model *model_0000001() // Compartments and Species: compartment cell; species M in cell, MpY in cell, MpT in cell, Mpp in cell, MAPKK in cell; species MKP in cell, MpY_MAPKK in cell, MpT_MAPKK in cell, M_MAPKK_Y in cell; species M_MAPKK_T in cell, Mpp_MKP_Y in cell, Mpp_MKP_T in cell, MpY_MKP_Y in cell; species MpY_MKP_T in cell, MpT_MKP_Y in cell, MpT_MKP_T in cell, M_MKP_T in cell; species M_MKP_Y in cell; // Reactions: reaction_0000001: M + MAPKK -> M_MAPKK_Y; cell*(k1*M*MAPKK - k_1*M_MAPKK_Y); reaction_0000002: M_MAPKK_Y => MpY + MAPKK; cell*k2*M_MAPKK_Y; reaction_0000003: MpY + MAPKK -> MpY_MAPKK; cell*(k3*MpY*MAPKK - k_3*MpY_MAPKK); reaction_0000004: MpY_MAPKK => Mpp + MAPKK; cell*k4*MpY_MAPKK; reaction_0000005: M + MAPKK -> M_MAPKK_T; cell*(k5*M*MAPKK - k_5*M_MAPKK_T); reaction_0000006: M_MAPKK_T => MpT + MAPKK; cell*k6*M_MAPKK_T; reaction_0000007: MpT + MAPKK -> MpT_MAPKK; cell*(k7*MpT*MAPKK - k_7*MpT_MAPKK); reaction_0000008: MpT_MAPKK => Mpp + MAPKK; cell*k8*MpT_MAPKK; reaction_0000009: Mpp + MKP -> Mpp_MKP_Y; cell*(h1*Mpp*MKP - h_1*Mpp_MKP_Y); reaction_0000010: Mpp_MKP_Y => MpT_MKP_Y; cell*h2*Mpp_MKP_Y; reaction_0000011: MpT_MKP_Y -> MpT + MKP; cell*(h3*MpT_MKP_Y - h_3*MpT*MKP); reaction_0000013: MpT + MKP -> MpT_MKP_T; cell*(h4*MpT*MKP - h_4*MpT_MKP_T); reaction_0000012: MpT_MKP_T => M_MKP_T; cell*h5*MpT_MKP_T; reaction_0000015: M_MKP_T -> M + MKP; cell*(h6*M_MKP_T - h_6*M*MKP); reaction_0000017: MpY + MKP -> MpY_MKP_Y; cell*(h7*MpY*MKP - h_7*MpY_MKP_Y); reaction_0000014: MpY_MKP_Y => M_MKP_Y; cell*h8*MpY_MKP_Y; reaction_0000019: M_MKP_Y -> M + MKP; cell*(h9*M_MKP_Y - h_9*M*MKP); reaction_0000020: Mpp + MKP -> Mpp_MKP_T; cell*(h10*Mpp*MKP - h_10*Mpp_MKP_T); reaction_0000021: Mpp_MKP_T => MpY_MKP_T; cell*h11*Mpp_MKP_T; reaction_0000022: MpY_MKP_T -> MpY + MKP; cell*(h12*MpY_MKP_T - h_12*MpY*MKP); // Species initializations: M = 800; MpY = 0; MpT = 0; Mpp = 0; MAPKK = 180; MKP = 100; MpY_MAPKK = 0; MpT_MAPKK = 0; M_MAPKK_Y = 0; M_MAPKK_T = 0; Mpp_MKP_Y = 0; Mpp_MKP_T = 0; MpY_MKP_Y = 0; MpY_MKP_T = 0; MpT_MKP_Y = 0; MpT_MKP_T = 0; M_MKP_T = 0; M_MKP_Y = 0; // Compartment initializations: cell = 1; // Variable initializations: k1 = 0.02; k_1 = 1; k2 = 0.01; k3 = 0.032; k_3 = 1; k4 = 15; k5 = 0.02; k_5 = 1; k6 = 0.01; k7 = 0.032; k_7 = 1; k8 = 15; h1 = 0.045; h_1 = 1; h2 = 0.092; h3 = 1; h_3 = 0.01; h4 = 0.01; h_4 = 1; h5 = 0.5; h6 = 0.086; h_6 = 0.0011; h7 = 0.01; h_7 = 1; h8 = 0.47; h9 = 0.14; h_9 = 0.0018; h10 = 0.045; h_10 = 1; h11 = 0.092; h12 = 1; h_12 = 0.01; // Other declarations: const cell, k1, k_1, k2, k3, k_3, k4, k5, k_5, k6, k7, k_7, k8, h1, h_1; const h2, h3, h_3, h4, h_4, h5, h6, h_6, h7, h_7, h8, h9, h_9, h10, h_10; const h11, h12, h_12; // Unit definitions: unit substance = 1e-9 mole; // Display Names: substance is "nanomole (default)"; M is "MAPK"; MpY is "MAPK-PY"; MpT is "MAPK-PT"; Mpp is "MAPK-PP"; MpY_MAPKK is "MAPK-PY_MAPKK"; MpT_MAPKK is "MAPK-PT_MAPKK"; M_MAPKK_Y is "MAPK_MAPKK_Y"; M_MAPKK_T is "MAPK_MAPKK_T"; Mpp_MKP_Y is "MAPK-PP_MKP_T"; Mpp_MKP_T is "MAPK-PP_MKP_Y"; MpY_MKP_Y is "MAPK-PY_MKP_Y"; MpY_MKP_T is "MAPK-PY_MKP_T"; MpT_MKP_Y is "MAPK-PT_MKP_Y"; MpT_MKP_T is "MAPK-PT_MKP_T"; M_MKP_T is "MAPK_MKP_T"; M_MKP_Y is "MAPK_MKP_Y"; reaction_0000001 is "binding MAPKK on Tyr site of MAPK"; reaction_0000002 is "tyr phosphorylation of MAPK"; reaction_0000003 is "binding of MAPKK on MAPK-PY"; reaction_0000004 is "thr phosphorylation of MAPK"; reaction_0000005 is "binding of MAPKK on Thr site of MAPK"; reaction_0000006 is "thr phosphorylation of MAPK"; reaction_0000007 is "binding MAPK-PT and MAPKK"; reaction_0000008 is "tyr phosphorylation of MAPK"; reaction_0000009 is "binding of MKP on Tyr site of MAPK-PP"; reaction_0000010 is "dephosphorylation of Tyr on MAPKK-PP"; reaction_0000011 is "dissociation MAPK-PT and MKP"; reaction_0000013 is "binding of MKP on Thr site of MAPK-PT"; reaction_0000012 is "dephosphorylation of MAPK-PT"; reaction_0000015 is "dissociation MAPK and MKP"; reaction_0000017 is "binding of MKP on the Tyr site of MAPK-PY"; reaction_0000014 is "dephosphorylation of MAPK-PY"; reaction_0000019 is "Dissociation MAPK and MKP"; reaction_0000020 is "binding of MKP on Thr site of MAPK-PP"; reaction_0000021 is "dephosphorylation of Thr on MAPKK-PP"; reaction_0000022 is "dissociation MAPK-PY and MKP"; end