// Created by libAntimony v2.8.0 model *BIOMD0000000015() // Compartments and Species: compartment cell; substanceOnly species PRPP in cell, IMP in cell, SAMP in cell, ATP in cell; substanceOnly species SAM in cell, Ade in cell, XMP in cell, GTP in cell; substanceOnly species dATP in cell, dGTP in cell, RNA in cell, DNA_ in cell; substanceOnly species HX in cell, Xa in cell, Gua in cell, UA in cell, $R5P in cell; substanceOnly species $Pi_ in cell; // Reactions: ada: ATP => HX; ada_aada*ATP^ada_fada4; ade: Ade => ; ade_aade*Ade^ade_fade6; adna: dATP => DNA_; adna_aadna*dATP^adna_fdnap9*dGTP^adna_fdnap10; adrnr: ATP => dATP; adrnr_aadrnr*ATP^adrnr_fadrnr4*dATP^adrnr_fadrnr9*dGTP^adrnr_fadrnr10; ampd: ATP => IMP; ampd_aampd*ATP^ampd_fampd4*GTP^ampd_fampd8*Pi_^ampd_fampd18; aprt: PRPP + Ade => ATP; aprt_aaprt*PRPP^aprt_faprt1*ATP^aprt_faprt4*Ade^aprt_faprt6; arna: ATP => RNA; arna_aarna*ATP^arna_frnap4*GTP^arna_frnap8; asuc: IMP => SAMP; asuc_aasuc*IMP^asuc_fasuc2*ATP^asuc_fasuc4*GTP^asuc_fasuc8*Pi_^asuc_fasuc18; asli: SAMP => ATP; asli_aasli*SAMP^asli_fasli3*ATP^asli_fasli4; dada: dATP => HX; dada_adada*dATP^dada_fdada9; den: PRPP => IMP; den_aden*PRPP^den_fden1*IMP^den_fden2*ATP^den_fden4*GTP^den_fden8*Pi_^den_fden18; dgnuc: dGTP => Gua; dgnuc_adgnuc*dGTP^dgnuc_fdgnuc10; dnaa: DNA_ => dATP; dnaa_adnaa*DNA_^dnaa_fdnan12; dnag: DNA_ => dGTP; dnag_adnag*DNA_^dnag_fdnan12; gdna: dGTP => DNA_; gdna_agdna*dATP^gdna_fdnap9*dGTP^gdna_fdnap10; gdrnr: GTP => dGTP; gdrnr_agdrnr*GTP^gdrnr_fgdrnr8*dATP^gdrnr_fgdrnr9*dGTP^gdrnr_fgdrnr10; gmpr: GTP => IMP; gmpr_agmpr*IMP^gmpr_fgmpr2*ATP^gmpr_fgmpr4*XMP^gmpr_fgmpr7*GTP^gmpr_fgmpr8; gmps: XMP => GTP; gmps_agmps*ATP^gmps_fgmps4*XMP^gmps_fgmps7; gnuc: GTP => Gua; gnuc_agnuc*GTP^gnuc_fgnuc8*Pi_^gnuc_fgnuc18; gprt: Gua + PRPP => GTP; gprt_agprt*PRPP^gprt_fgprt1*GTP^gprt_fgprt8*Gua^gprt_fgprt15; grna: GTP => RNA; grna_agrna*ATP^grna_frnap4*GTP^grna_frnap8; gua: Gua => Xa; gua_agua*Gua^gua_fgua15; hprt: HX + PRPP => IMP; hprt_ahprt*PRPP^hprt_fhprt1*IMP^hprt_fhprt2*HX^hprt_fhprt13; hx: HX => ; hx_ahx*HX^hx_fhx13; hxd: HX => Xa; hxd_ahxd*HX^hxd_fhxd13; impd: IMP => XMP; impd_aimpd*IMP^impd_fimpd2*XMP^impd_fimpd7*GTP^impd_fimpd8; inuc: IMP => HX; inuc_ainuc*IMP^inuc_finuc2*Pi_^inuc_finuc18; mat: ATP => SAM; mat_amat*ATP^mat_fmat4*SAM^mat_fmat5; polyam: SAM => Ade; polyam_apolyam*SAM^polyam_fpolyam5; prpps: $R5P => PRPP; prpps_aprpps*PRPP^prpps_fprpps1*ATP^prpps_fprpps4*GTP^prpps_fprpps8*R5P^prpps_fprpps17*Pi_^prpps_fprpps18; pyr: PRPP => ; pyr_apyr*PRPP^pyr_fpyr1; rnaa: RNA => ATP; rnaa_arnaa*RNA^rnaa_frnan11; rnag: RNA => GTP; rnag_arnag*RNA^rnag_frnan11; trans: SAM => ATP; trans_atrans*SAM^trans_ftrans5; ua: UA => ; ua_aua*UA^ua_fua16; x: Xa => ; x_ax*Xa^x_fx14; xd: Xa => UA; xd_axd*Xa^xd_fxd14; // Species initializations: PRPP = 5.01742/cell; IMP = 98.2634/cell; SAMP = 0.198189/cell; ATP = 2475.35/cell; SAM = 3.99187/cell; Ade = 0.98473/cell; XMP = 24.793/cell; GTP = 410.223/cell; dATP = 6.01413/cell; dGTP = 3.02581/cell; RNA = 28680.5/cell; DNA_ = 5179.34/cell; HX = 9.51785/cell; Xa = 5.05941/cell; Gua = 5.50638/cell; UA = 100.293/cell; R5P = 18/cell; Pi_ = 1400/cell; // Compartment initializations: cell = 1; // Variable initializations: ada_aada = 0.001062; ada_fada4 = 0.97; ade_aade = 0.01; ade_fade6 = 0.55; adna_aadna = 3.2789; adna_fdnap9 = 0.42; adna_fdnap10 = 0.33; adrnr_aadrnr = 0.0602; adrnr_fadrnr4 = 0.1; adrnr_fadrnr9 = -0.3; adrnr_fadrnr10 = 0.87; ampd_aampd = 0.02688; ampd_fampd4 = 0.8; ampd_fampd8 = -0.03; ampd_fampd18 = -0.1; aprt_aaprt = 233.8; aprt_faprt1 = 0.5; aprt_faprt4 = -0.8; aprt_faprt6 = 0.75; arna_aarna = 614.5; arna_frnap4 = 0.05; arna_frnap8 = 0.13; asuc_aasuc = 3.5932; asuc_fasuc2 = 0.4; asuc_fasuc4 = -0.24; asuc_fasuc8 = 0.2; asuc_fasuc18 = -0.05; asli_aasli = 66544; asli_fasli3 = 0.99; asli_fasli4 = -0.95; dada_adada = 0.03333; dada_fdada9 = 1; den_aden = 5.2728; den_fden1 = 2; den_fden2 = -0.06; den_fden4 = -0.25; den_fden8 = -0.2; den_fden18 = -0.08; dgnuc_adgnuc = 0.03333; dgnuc_fdgnuc10 = 1; dnaa_adnaa = 0.001938; dnaa_fdnan12 = 1; dnag_adnag = 0.001318; dnag_fdnan12 = 1; gdna_agdna = 2.2296; gdna_fdnap9 = 0.42; gdna_fdnap10 = 0.33; gdrnr_agdrnr = 0.1199; gdrnr_fgdrnr8 = 0.4; gdrnr_fgdrnr9 = -1.2; gdrnr_fgdrnr10 = -0.39; gmpr_agmpr = 0.3005; gmpr_fgmpr2 = -0.15; gmpr_fgmpr4 = -0.07; gmpr_fgmpr7 = -0.76; gmpr_fgmpr8 = 0.7; gmps_agmps = 0.3738; gmps_fgmps4 = 0.12; gmps_fgmps7 = 0.16; gnuc_agnuc = 0.2511; gnuc_fgnuc8 = 0.9; gnuc_fgnuc18 = -0.34; gprt_agprt = 361.69; gprt_fgprt1 = 1.2; gprt_fgprt8 = -1.2; gprt_fgprt15 = 0.42; grna_agrna = 409.6; grna_frnap4 = 0.05; grna_frnap8 = 0.13; gua_agua = 0.4919; gua_fgua15 = 0.5; hprt_ahprt = 12.569; hprt_fhprt1 = 1.1; hprt_fhprt2 = -0.89; hprt_fhprt13 = 0.48; hx_ahx = 0.003793; hx_fhx13 = 1.12; hxd_ahxd = 0.2754; hxd_fhxd13 = 0.65; impd_aimpd = 1.2823; impd_fimpd2 = 0.15; impd_fimpd7 = -0.09; impd_fimpd8 = -0.03; inuc_ainuc = 0.9135; inuc_finuc2 = 0.8; inuc_finuc18 = -0.36; mat_amat = 7.2067; mat_fmat4 = 0.2; mat_fmat5 = -0.6; polyam_apolyam = 0.29; polyam_fpolyam5 = 0.9; prpps_aprpps = 0.9; prpps_fprpps1 = -0.03; prpps_fprpps4 = -0.45; prpps_fprpps8 = -0.04; prpps_fprpps17 = 0.65; prpps_fprpps18 = 0.7; pyr_apyr = 1.2951; pyr_fpyr1 = 1.27; rnaa_arnaa = 0.06923; rnaa_frnan11 = 1; rnag_arnag = 0.04615; rnag_frnan11 = 1; trans_atrans = 8.8539; trans_ftrans5 = 0.33; ua_aua = 8.744e-005; ua_fua16 = 2.21; x_ax = 0.0012; x_fx14 = 2; xd_axd = 0.949; xd_fxd14 = 0.55; // Other declarations: const cell; // Unit definitions: unit substance = 1e-6 mole; unit time_unit = 60 second; // Display Names: substance is "micromole (default)"; time_unit is "minute (default)"; PRPP is "phosphoribosylpyrophosphate"; IMP is "inosine monophosphate"; SAMP is "adenylosuccinate"; ATP is "ATP_ADP_AMP_Ado"; SAM is "s-adenosyl-L-methionine"; Ade is "adenine"; XMP is "xanthosine monophosphate"; GTP is "GTP_GDP_GMP"; dATP is "dATP_dADP_dAMP_dAdo"; dGTP is "dGTP_dGDP_dGMP"; HX is "dIno_Ino_HX"; Xa is "xanthine"; Gua is "guanine"; UA is "uric acid"; R5P is "ribose-5-phosphate"; Pi_ is "phosphate"; end