// Created by libAntimony v2.8.0
model *untitled()

  // Compartments and Species:
  compartment chloroplast, cytosol;
  species $x_CO2 in chloroplast, RuBP_ch in chloroplast, PGA_ch in chloroplast;
  species ATP_ch in chloroplast, BPGA_ch in chloroplast, $x_NADPH_ch in chloroplast;
  species GAP_ch in chloroplast, Pi_ch in chloroplast, DHAP_ch in chloroplast;
  species FBP_ch in chloroplast, F6P_ch in chloroplast, E4P_ch in chloroplast;
  species X5P_ch in chloroplast, SBP_ch in chloroplast, S7P_ch in chloroplast;
  species R5P_ch in chloroplast, Ru5P_ch in chloroplast, $x_Pi_cyt in cytosol;
  species $x_GAP_cyt in cytosol, G6P_ch in chloroplast, $x_NADP_ch in chloroplast;
  species $x_PGA_cyt in cytosol, ADP_ch in chloroplast, $x_DHAP_cyt in cytosol;
  species $x_Proton_ch in chloroplast, G1P_ch in chloroplast, $x_Starch_ch in chloroplast;

  // Reactions:
  E1: RuBP_ch + $x_CO2 => 2PGA_ch; (Light_on*E1_Rbco_vm*RuBP_ch*chloroplast)/(RuBP_ch + E1_Rbco_km*(1 + PGA_ch/E1_Rbco_KiPGA + FBP_ch/E1_Rbco_KiFBP + SBP_ch/E1_Rbco_KiSBP + Pi_ch/E1_Rbco_KiPi + x_NADPH_ch/E1_Rbco_KiNADPH));
  E2: PGA_ch + ATP_ch => BPGA_ch + ADP_ch; Light_on*E2_PGK_v*chloroplast*(PGA_ch*ATP_ch - (BPGA_ch*ADP_ch)/E2_q2);
  E3: $x_NADPH_ch + BPGA_ch + $x_Proton_ch => $x_NADP_ch + GAP_ch + Pi_ch; Light_on*E3_G3Pdh_v*chloroplast*(BPGA_ch*x_NADPH_ch*x_Proton_ch - (x_NADP_ch*GAP_ch*Pi_ch)/E3_q3);
  E4: GAP_ch -> DHAP_ch; chloroplast*E4_TPI_v*(GAP_ch - DHAP_ch/E4_q4);
  E5: GAP_ch + DHAP_ch -> FBP_ch; E5_F_Aldo_v*chloroplast*(DHAP_ch*GAP_ch - FBP_ch/E5_q5);
  E6: FBP_ch => F6P_ch + Pi_ch; (Light_on*E6_FBPase_ch_vm*FBP_ch*chloroplast)/(FBP_ch + E6_FBPase_ch_km*(1 + F6P_ch/E6_FBPase_ch_KiF6P + Pi_ch/E6_FBPase_ch_KiPi));
  E7: GAP_ch + F6P_ch -> X5P_ch + E4P_ch; chloroplast*E7_F_TKL_v*(F6P_ch*GAP_ch - (E4P_ch*X5P_ch)/E7_q7);
  E8: DHAP_ch + E4P_ch -> SBP_ch; chloroplast*E8_E_Aldo_v*(E4P_ch*DHAP_ch - SBP_ch/E8_q8);
  E9: SBP_ch => Pi_ch + S7P_ch; (Light_on*E9_SBPase_ch_vm*SBP_ch*chloroplast)/(SBP_ch + E9_SBPase_ch_km*(1 + Pi_ch/E9_SBPase_ch_KiPi));
  E10: S7P_ch + GAP_ch -> R5P_ch + X5P_ch; chloroplast*E10_G_TKL_v*(GAP_ch*S7P_ch - (X5P_ch*R5P_ch)/E10_q10);
  E11: R5P_ch -> Ru5P_ch; E11_R5Piso_v*chloroplast*(R5P_ch - Ru5P_ch/E11_q11);
  E12: X5P_ch -> Ru5P_ch; chloroplast*E12_X5Pepi_v*(X5P_ch - Ru5P_ch/E12_q12);
  E13: Ru5P_ch + ATP_ch => RuBP_ch + ADP_ch; (Light_on*E13_Ru5Pk_ch_vm*Ru5P_ch*chloroplast*ATP_ch)/((Ru5P_ch + E13_Ru5Pk_ch_km1*(1 + PGA_ch/E13_Ru5Pk_ch_KiPGA + RuBP_ch/E13_Ru5Pk_ch_KiRuBP + Pi_ch/E13_Ru5Pk_ch_KiPi))*(ATP_ch*(1 + ADP_ch/E13_Ru5Pk_ch_KiADP1) + E13_Ru5Pk_ch_km2*(1 + ADP_ch/E13_Ru5Pk_ch_KiADP2)));
  E14: F6P_ch -> G6P_ch; E14_PGI_v*chloroplast*(F6P_ch - G6P_ch/E14_q14);
  E15: G6P_ch -> G1P_ch; E15_PGM_v*chloroplast*(G6P_ch - G1P_ch/E15_q15);
  light_reaction: Pi_ch + ADP_ch => ATP_ch; (Light_on*light_reaction_LR_vm*ADP_ch*Pi_ch*chloroplast)/((ADP_ch + light_reaction_LR_kmADP)*(Pi_ch + light_reaction_LR_kmPi));
  E16: ATP_ch + G1P_ch => $x_Starch_ch + ADP_ch + 2Pi_ch; (E16_StSyn_vm*G1P_ch*ATP_ch*chloroplast)/((G1P_ch + E16_stsyn_ch_km1)*(1 + ADP_ch/E16_stsyn_ch_Ki)*(ATP_ch + E16_stsyn_ch_km2) + (E16_stsyn_ch_km2*Pi_ch)/(E16_stsyn_ch_ka1*PGA_ch) + E16_stsyn_ch_ka2*F6P_ch + E16_stsyn_ch_ka3*FBP_ch);
  E17: $x_Starch_ch + Pi_ch => G1P_ch; (E17_StPase_Vm*Pi_ch*chloroplast)/(Pi_ch + E17_StPase_km*(1 + G1P_ch/E17_StPase_kiG1P));
  E18_DHAP: $x_Pi_cyt + DHAP_ch => $x_DHAP_cyt + Pi_ch; (E18_DHAP_TP_Piap_vm*DHAP_ch*chloroplast)/(E18_DHAP_TP_Piap_kDHAP_ch*(1 + (1 + E18_DHAP_TP_Piap_kPi_cyt/x_Pi_cyt)*(Pi_ch/E18_DHAP_TP_Piap_kPi_ch + PGA_ch/E18_DHAP_TP_Piap_kPGA_ch + DHAP_ch/E18_DHAP_TP_Piap_kDHAP_ch + GAP_ch/E18_DHAP_TP_Piap_kGAP_ch)));
  E18_PGA: $x_Pi_cyt + PGA_ch => $x_PGA_cyt + Pi_ch; (E18_PGA_PGA_xpMult*E18_PGA_TP_Piap_vm*PGA_ch*chloroplast)/(E18_PGA_TP_Piap_kPGA_ch*(1 + (1 + E18_PGA_TP_Piap_kPi_cyt/x_Pi_cyt)*(Pi_ch/E18_PGA_TP_Piap_kPi_ch + PGA_ch/E18_PGA_TP_Piap_kPGA_ch + DHAP_ch/E18_PGA_TP_Piap_kDHAP_ch + GAP_ch/E18_PGA_TP_Piap_kGAP_ch)));
  E18_GAP: $x_Pi_cyt + GAP_ch => $x_GAP_cyt + Pi_ch; (E18_GAP_TP_Piap_vm*GAP_ch*chloroplast)/(E18_GAP_TP_Piap_kGAP_ch*(1 + (1 + E18_GAP_TP_Piap_kPi_cyt/x_Pi_cyt)*(Pi_ch/E18_GAP_TP_Piap_kPi_ch + PGA_ch/E18_GAP_TP_Piap_kPGA_ch + DHAP_ch/E18_GAP_TP_Piap_kDHAP_ch + GAP_ch/E18_GAP_TP_Piap_kGAP_ch)));

  // Species initializations:
  x_CO2 = 1;
  RuBP_ch = 0.33644;
  PGA_ch = 3.35479;
  ATP_ch = 0.49806;
  BPGA_ch = 0.14825;
  x_NADPH_ch = 0.21;
  GAP_ch = 0.01334;
  Pi_ch = 1.5662;
  DHAP_ch = 0.29345;
  FBP_ch = 0.02776;
  F6P_ch = 1.36481;
  E4P_ch = 0.41021;
  X5P_ch = 0.00363;
  SBP_ch = 1.56486;
  S7P_ch = 0.00541;
  R5P_ch = 0.00599;
  Ru5P_ch = 0.00235;
  x_Pi_cyt = 0.5;
  x_GAP_cyt = 1;
  G6P_ch = 3.1396;
  x_NADP_ch = 0.29;
  x_PGA_cyt = 1;
  ADP_ch = 0.00149;
  x_DHAP_cyt = 1;
  x_Proton_ch = 2.512e-005;
  G1P_ch = 0.18206;
  x_Starch_ch = 1;

  // Compartment initializations:
  chloroplast = 1;
  cytosol = 1;

  // Variable initializations:
  Light_on = 1;
  E1_Rbco_vm = 340;
  E1_Rbco_km = 0.02;
  E1_Rbco_KiPGA = 0.84;
  E1_Rbco_KiFBP = 0.04;
  E1_Rbco_KiSBP = 0.075;
  E1_Rbco_KiPi = 0.9;
  E1_Rbco_KiNADPH = 0.07;
  E2_PGK_v = 500000000;
  E2_q2 = 0.00031;
  E3_G3Pdh_v = 500000000;
  E3_q3 = 16000000;
  E4_TPI_v = 500000000;
  E4_q4 = 22;
  E5_F_Aldo_v = 500000000;
  E5_q5 = 7.1;
  E6_FBPase_ch_vm = 200;
  E6_FBPase_ch_km = 0.03;
  E6_FBPase_ch_KiF6P = 0.7;
  E6_FBPase_ch_KiPi = 12;
  E7_F_TKL_v = 500000000;
  E7_q7 = 0.084;
  E8_E_Aldo_v = 500000000;
  E8_q8 = 13;
  E9_SBPase_ch_vm = 40;
  E9_SBPase_ch_km = 0.013;
  E9_SBPase_ch_KiPi = 12;
  E10_G_TKL_v = 500000000;
  E10_q10 = 0.85;
  E11_R5Piso_v = 500000000;
  E11_q11 = 0.4;
  E12_X5Pepi_v = 500000000;
  E12_q12 = 0.67;
  E13_Ru5Pk_ch_vm = 10000;
  E13_Ru5Pk_ch_km1 = 0.05;
  E13_Ru5Pk_ch_KiPGA = 2;
  E13_Ru5Pk_ch_KiRuBP = 0.7;
  E13_Ru5Pk_ch_KiPi = 4;
  E13_Ru5Pk_ch_KiADP1 = 2.5;
  E13_Ru5Pk_ch_km2 = 0.05;
  E13_Ru5Pk_ch_KiADP2 = 0.4;
  E14_PGI_v = 500000000;
  E14_q14 = 2.3;
  E15_PGM_v = 500000000;
  E15_q15 = 0.058;
  light_reaction_LR_vm = 3500;
  light_reaction_LR_kmADP = 0.014;
  light_reaction_LR_kmPi = 0.3;
  E16_StSyn_vm = 40;
  E16_stsyn_ch_km1 = 0.08;
  E16_stsyn_ch_Ki = 10;
  E16_stsyn_ch_km2 = 0.08;
  E16_stsyn_ch_ka1 = 0.1;
  E16_stsyn_ch_ka2 = 0.02;
  E16_stsyn_ch_ka3 = 0.02;
  E17_StPase_Vm = 40;
  E17_StPase_km = 0.1;
  E17_StPase_kiG1P = 0.05;
  E18_DHAP_TP_Piap_vm = 250;
  E18_DHAP_TP_Piap_kDHAP_ch = 0.077;
  E18_DHAP_TP_Piap_kPi_cyt = 0.74;
  E18_DHAP_TP_Piap_kPi_ch = 0.63;
  E18_DHAP_TP_Piap_kPGA_ch = 0.25;
  E18_DHAP_TP_Piap_kGAP_ch = 0.075;
  E18_PGA_PGA_xpMult = 0.75;
  E18_PGA_TP_Piap_vm = 250;
  E18_PGA_TP_Piap_kPGA_ch = 0.25;
  E18_PGA_TP_Piap_kPi_cyt = 0.74;
  E18_PGA_TP_Piap_kPi_ch = 0.63;
  E18_PGA_TP_Piap_kDHAP_ch = 0.077;
  E18_PGA_TP_Piap_kGAP_ch = 0.075;
  E18_GAP_TP_Piap_vm = 250;
  E18_GAP_TP_Piap_kGAP_ch = 0.075;
  E18_GAP_TP_Piap_kPi_cyt = 0.74;
  E18_GAP_TP_Piap_kPi_ch = 0.63;
  E18_GAP_TP_Piap_kPGA_ch = 0.25;
  E18_GAP_TP_Piap_kDHAP_ch = 0.077;

  // Other declarations:
  const chloroplast, cytosol, Light_on;

  // Unit definitions:
  unit substance = 1e-3 mole;

  // Display Names:
  substance is "mM";
end